miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7016 5' -60 NC_001875.2 + 8475 0.66 0.709583
Target:  5'- cACGuCGCGCGGaaacaccacGCcGGGCGCcguccguguggGCGCCg -3'
miRNA:   3'- uUGCuGCGCGUC---------CGuCUCGCG-----------UGCGG- -5'
7016 5' -60 NC_001875.2 + 22198 0.66 0.709583
Target:  5'- aAAUGACGcCGCguuGGGCAGcGCGUuuCGCa -3'
miRNA:   3'- -UUGCUGC-GCG---UCCGUCuCGCGu-GCGg -5'
7016 5' -60 NC_001875.2 + 72584 0.66 0.709583
Target:  5'- uGCGG-GUGCGGGCGcuGCGgGCGCUu -3'
miRNA:   3'- uUGCUgCGCGUCCGUcuCGCgUGCGG- -5'
7016 5' -60 NC_001875.2 + 59083 0.66 0.709583
Target:  5'- gGGCGAcacaCGCGC-GuuGGAGCGCACcuuggGCCg -3'
miRNA:   3'- -UUGCU----GCGCGuCcgUCUCGCGUG-----CGG- -5'
7016 5' -60 NC_001875.2 + 61584 0.66 0.709583
Target:  5'- cGACGAgGUGgAGGUAGcGCccgaucaccGCGCGCUg -3'
miRNA:   3'- -UUGCUgCGCgUCCGUCuCG---------CGUGCGG- -5'
7016 5' -60 NC_001875.2 + 32470 0.66 0.709583
Target:  5'- uGCGGCGCuuugGCcacuuGGCGG-GCGCGC-CCa -3'
miRNA:   3'- uUGCUGCG----CGu----CCGUCuCGCGUGcGG- -5'
7016 5' -60 NC_001875.2 + 23174 0.66 0.709583
Target:  5'- cACGGCGgcUGCGGGCAcGGCcGUugGCg -3'
miRNA:   3'- uUGCUGC--GCGUCCGUcUCG-CGugCGg -5'
7016 5' -60 NC_001875.2 + 128295 0.66 0.709583
Target:  5'- --aGACGCGCcacGGCgccGGuGaCGUGCGCCa -3'
miRNA:   3'- uugCUGCGCGu--CCG---UCuC-GCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 81890 0.66 0.709583
Target:  5'- cAGCG-CGCGCAGcuccgacgaccaGCuGAuuaGCGCGCGCg -3'
miRNA:   3'- -UUGCuGCGCGUC------------CGuCU---CGCGUGCGg -5'
7016 5' -60 NC_001875.2 + 108365 0.66 0.709583
Target:  5'- cGACGACGCGUcGGUgauguGGAuCG-ACGCCg -3'
miRNA:   3'- -UUGCUGCGCGuCCG-----UCUcGCgUGCGG- -5'
7016 5' -60 NC_001875.2 + 30924 0.66 0.706609
Target:  5'- gAGCGA-GCGC-GGC-GAGCGUcuccgcgcgcugcgGCGCCc -3'
miRNA:   3'- -UUGCUgCGCGuCCGuCUCGCG--------------UGCGG- -5'
7016 5' -60 NC_001875.2 + 125121 0.66 0.706609
Target:  5'- aAGCGA-GCGCAauuguGGCGGGGCaugguguacaaaugGCguGCGCCg -3'
miRNA:   3'- -UUGCUgCGCGU-----CCGUCUCG--------------CG--UGCGG- -5'
7016 5' -60 NC_001875.2 + 126025 0.66 0.705616
Target:  5'- -uCGGCgGCGCuGGCAGucuacuaccuuauGCGCA-GCCg -3'
miRNA:   3'- uuGCUG-CGCGuCCGUCu------------CGCGUgCGG- -5'
7016 5' -60 NC_001875.2 + 13731 0.66 0.70363
Target:  5'- uGGCGGCaaugcgguuGCGCAGGCGGuccuccauguccauGGUgguaauguaaggaaGCGCGCCc -3'
miRNA:   3'- -UUGCUG---------CGCGUCCGUC--------------UCG--------------CGUGCGG- -5'
7016 5' -60 NC_001875.2 + 85242 0.66 0.70363
Target:  5'- cGACGA-GCGCGGGUuccGCGCucggcgcggacacgaGCGCCc -3'
miRNA:   3'- -UUGCUgCGCGUCCGucuCGCG---------------UGCGG- -5'
7016 5' -60 NC_001875.2 + 77884 0.66 0.699648
Target:  5'- cAAUGAuUGUGUugAGGCGGGcccccaagaaucGUGCGCGCCa -3'
miRNA:   3'- -UUGCU-GCGCG--UCCGUCU------------CGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 63137 0.66 0.699648
Target:  5'- --gGGCGCGC-GGCc-GGCGCACGgguCCa -3'
miRNA:   3'- uugCUGCGCGuCCGucUCGCGUGC---GG- -5'
7016 5' -60 NC_001875.2 + 38236 0.66 0.699648
Target:  5'- -uUGACG---AGGCGGaAGCGCGCGUCu -3'
miRNA:   3'- uuGCUGCgcgUCCGUC-UCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 59143 0.66 0.699648
Target:  5'- uAACGGCGCGCAccGCGGAGCaaaacCugGUg -3'
miRNA:   3'- -UUGCUGCGCGUc-CGUCUCGc----GugCGg -5'
7016 5' -60 NC_001875.2 + 35364 0.66 0.699648
Target:  5'- uAC-ACGgGCAGGUGGAGCaGCuggagGCGCUg -3'
miRNA:   3'- uUGcUGCgCGUCCGUCUCG-CG-----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.