miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 5' -60.1 NC_001875.2 + 101234 0.66 0.706846
Target:  5'- gCGCGCaguUUAAaGGCGGC-GGUGUAAAa -3'
miRNA:   3'- -GCGCGg--AGUUgCCGCCGgCCGCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 9534 0.66 0.706846
Target:  5'- cCGCGCC-CGAUaggacGCGGCUGGUGa--- -3'
miRNA:   3'- -GCGCGGaGUUGc----CGCCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 129544 0.66 0.706846
Target:  5'- cCGUaugCUCcACGGCgGGCCGGCGUu-- -3'
miRNA:   3'- -GCGcg-GAGuUGCCG-CCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 39164 0.66 0.706846
Target:  5'- gGgGCCgCGA-GGCgGGCCGGCGg--- -3'
miRNA:   3'- gCgCGGaGUUgCCG-CCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 75648 0.66 0.706846
Target:  5'- gGCGUCggCGAUGGCGuuggcGUCGGCGUc-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGC-----CGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 103115 0.66 0.706846
Target:  5'- uCGUGgCUCGcuugGCGGCGGC-GGCGc--- -3'
miRNA:   3'- -GCGCgGAGU----UGCCGCCGgCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 108244 0.66 0.706846
Target:  5'- aGCGCgUCAACgGGCuGCUGGCc---- -3'
miRNA:   3'- gCGCGgAGUUG-CCGcCGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 9809 0.66 0.703875
Target:  5'- gGCGCCaUCGGCGGCugcuauaaaaaacgGGCgaGGcCGUAGGg -3'
miRNA:   3'- gCGCGG-AGUUGCCG--------------CCGg-CC-GCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 31210 0.66 0.700899
Target:  5'- aCGCGCacgcugCUCAuccacgaggcaaacaGCGGCcgcGGCCGGCGc--- -3'
miRNA:   3'- -GCGCG------GAGU---------------UGCCG---CCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 72628 0.66 0.696923
Target:  5'- gGCGacguaaUCGGCGGCGGCCuGCuGUGu- -3'
miRNA:   3'- gCGCgg----AGUUGCCGCCGGcCG-CAUuu -5'
7019 5' -60.1 NC_001875.2 + 89755 0.66 0.696923
Target:  5'- aGUGUUUCGGCaaaauGGUGGUCGGCGa--- -3'
miRNA:   3'- gCGCGGAGUUG-----CCGCCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 29279 0.66 0.696923
Target:  5'- cCGCGCCggCGGgGcGCGGUCguguGGCGUGu- -3'
miRNA:   3'- -GCGCGGa-GUUgC-CGCCGG----CCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 124203 0.66 0.695928
Target:  5'- aGCGCgUCGGCGuGUgugcgcaGGUCGGUGUAc- -3'
miRNA:   3'- gCGCGgAGUUGC-CG-------CCGGCCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 75390 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75348 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75288 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75510 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 81336 0.66 0.686947
Target:  5'- uCGUGCCgc-GCGGCGcGCUGGUGc--- -3'
miRNA:   3'- -GCGCGGaguUGCCGC-CGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 26542 0.66 0.686947
Target:  5'- gGCGCUUgAGuCGGCGuGCUGGCa---- -3'
miRNA:   3'- gCGCGGAgUU-GCCGC-CGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 94482 0.66 0.686947
Target:  5'- gCGCGCgUUCGcacgaGCGcGCGGCCGcGCGcAAAg -3'
miRNA:   3'- -GCGCG-GAGU-----UGC-CGCCGGC-CGCaUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.