miRNA display CGI


Results 1 - 20 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 5' -57.1 NC_001875.2 + 93396 0.66 0.877273
Target:  5'- aCGACGCGggCGCGUUAaUCAGCCGUu -3'
miRNA:   3'- gGUUGCGCggGUGCGGUaGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 104470 0.66 0.877273
Target:  5'- aCCAGCGgGCgCAacgUGCUggUgAGCCGCa -3'
miRNA:   3'- -GGUUGCgCGgGU---GCGGuaGgUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 38147 0.66 0.877273
Target:  5'- -aAACGUGUCCAa---GUCCAugCGCg -3'
miRNA:   3'- ggUUGCGCGGGUgcggUAGGUugGCG- -5'
7020 5' -57.1 NC_001875.2 + 31817 0.66 0.877273
Target:  5'- aCCAGCGCGCaacagugcaCCAgGUUugcgaCCAgcACCGCg -3'
miRNA:   3'- -GGUUGCGCG---------GGUgCGGua---GGU--UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 10865 0.66 0.877273
Target:  5'- aCGACGCGguggCCGCGUCGguggCgCuGCCGCg -3'
miRNA:   3'- gGUUGCGCg---GGUGCGGUa---G-GuUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 114547 0.66 0.877273
Target:  5'- aUCGGCgGCGCUCACGaCGcUCCAguGCgGCg -3'
miRNA:   3'- -GGUUG-CGCGGGUGCgGU-AGGU--UGgCG- -5'
7020 5' -57.1 NC_001875.2 + 7065 0.66 0.877273
Target:  5'- uCCGcUGCGgCgACGCCA-CCGGCCuguGCg -3'
miRNA:   3'- -GGUuGCGCgGgUGCGGUaGGUUGG---CG- -5'
7020 5' -57.1 NC_001875.2 + 100883 0.66 0.877273
Target:  5'- aUAACGCGUaa--GCCgGUCCGggcGCCGCa -3'
miRNA:   3'- gGUUGCGCGggugCGG-UAGGU---UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 130680 0.66 0.877273
Target:  5'- gCGACGaCGCCuCugGCUgGUCCGcuugcauguacGCCGUg -3'
miRNA:   3'- gGUUGC-GCGG-GugCGG-UAGGU-----------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 110395 0.66 0.877273
Target:  5'- uCguGCGUGCCCGuggagaucaagUGcCCGUUCAacuACCGCg -3'
miRNA:   3'- -GguUGCGCGGGU-----------GC-GGUAGGU---UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 3666 0.66 0.877273
Target:  5'- gCuGCGCGCUUGCGCg--CCAACCa- -3'
miRNA:   3'- gGuUGCGCGGGUGCGguaGGUUGGcg -5'
7020 5' -57.1 NC_001875.2 + 128513 0.66 0.877273
Target:  5'- aCGAgGCGCCCgucccgcuuaucGCGCCuauaaauaCAGcCCGCa -3'
miRNA:   3'- gGUUgCGCGGG------------UGCGGuag-----GUU-GGCG- -5'
7020 5' -57.1 NC_001875.2 + 86384 0.66 0.877273
Target:  5'- gCGGCugcggGCGCCgaGCGCCGagUUCGACgCGCa -3'
miRNA:   3'- gGUUG-----CGCGGg-UGCGGU--AGGUUG-GCG- -5'
7020 5' -57.1 NC_001875.2 + 36604 0.66 0.877273
Target:  5'- gCCGcugcGCGuCGCCCuuGCaCCA-CCGAUCGCg -3'
miRNA:   3'- -GGU----UGC-GCGGG--UGcGGUaGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 104163 0.66 0.870071
Target:  5'- -aGACGCGUCCGacauUGUCAaCUAucGCCGCg -3'
miRNA:   3'- ggUUGCGCGGGU----GCGGUaGGU--UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 100674 0.66 0.870071
Target:  5'- gCGGCGCGUUagCACaCUGUCCGAcuCCGCg -3'
miRNA:   3'- gGUUGCGCGG--GUGcGGUAGGUU--GGCG- -5'
7020 5' -57.1 NC_001875.2 + 78326 0.66 0.870071
Target:  5'- gCCAACGagaaccuaGCUCACaugg-CCAACCGCa -3'
miRNA:   3'- -GGUUGCg-------CGGGUGcgguaGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 37430 0.66 0.870071
Target:  5'- gCCGugGCGCaguCgGCgGCCAaaUAGCCGCc -3'
miRNA:   3'- -GGUugCGCG---GgUG-CGGUagGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 54408 0.66 0.870071
Target:  5'- aCGGCuCGUCCAUGCCGcUCUugUCGCc -3'
miRNA:   3'- gGUUGcGCGGGUGCGGU-AGGuuGGCG- -5'
7020 5' -57.1 NC_001875.2 + 58902 0.66 0.870071
Target:  5'- gCgAACGCGCgCUACgaaGCCGcggacgCCAagaGCCGCg -3'
miRNA:   3'- -GgUUGCGCG-GGUG---CGGUa-----GGU---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.