miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7029 3' -45.8 NC_001875.2 + 35497 0.66 0.999959
Target:  5'- aGCGGCAuGACAa----CUGCcggcaACGGGCg -3'
miRNA:   3'- -CGCCGUuUUGUguuuaGACG-----UGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 96539 0.66 0.999959
Target:  5'- aGCGGuCGcAACugGAG-CUGUugGAAa -3'
miRNA:   3'- -CGCC-GUuUUGugUUUaGACGugCUUg -5'
7029 3' -45.8 NC_001875.2 + 41356 0.66 0.999959
Target:  5'- cGCGcGCAguuuGAACGCGcg-CUGCAgCGAAa -3'
miRNA:   3'- -CGC-CGU----UUUGUGUuuaGACGU-GCUUg -5'
7029 3' -45.8 NC_001875.2 + 55718 0.66 0.999959
Target:  5'- aCGGCc--GCGCAAAUacgGC-CGAGCg -3'
miRNA:   3'- cGCCGuuuUGUGUUUAga-CGuGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 72563 0.66 0.999959
Target:  5'- uGCgGGCGcGGGCGCGGGcgCUGCggguGCGGGCg -3'
miRNA:   3'- -CG-CCGU-UUUGUGUUUa-GACG----UGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 47707 0.66 0.999959
Target:  5'- cGgGGCAAGuGCACGAcugccugCUGCuuGAGCc -3'
miRNA:   3'- -CgCCGUUU-UGUGUUua-----GACGugCUUG- -5'
7029 3' -45.8 NC_001875.2 + 124891 0.66 0.999959
Target:  5'- cGUGGCGAuguCGCGGcgCacGCACGAcGCg -3'
miRNA:   3'- -CGCCGUUuu-GUGUUuaGa-CGUGCU-UG- -5'
7029 3' -45.8 NC_001875.2 + 1031 0.66 0.999959
Target:  5'- cGUGGCGGGgcccgaggcGCACAGcgUUGgGCGcAACg -3'
miRNA:   3'- -CGCCGUUU---------UGUGUUuaGACgUGC-UUG- -5'
7029 3' -45.8 NC_001875.2 + 86136 0.66 0.999959
Target:  5'- uCGGCAGuGCGCGGcgC-GCGCGGc- -3'
miRNA:   3'- cGCCGUUuUGUGUUuaGaCGUGCUug -5'
7029 3' -45.8 NC_001875.2 + 76934 0.66 0.999957
Target:  5'- aGCGGCuccagcgaggacgAAGACGCGccgugcgagcccAAg-UGCGCGAACa -3'
miRNA:   3'- -CGCCG-------------UUUUGUGU------------UUagACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 29550 0.66 0.999953
Target:  5'- uGCGGCGcgccaauugcucggGAGCucauucuGCAAcgC-GCGCGAGCg -3'
miRNA:   3'- -CGCCGU--------------UUUG-------UGUUuaGaCGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 94760 0.66 0.999944
Target:  5'- cGCGGCGgugucguccgccAAACACAGcguggccgcGUCcGCGCGcguGCa -3'
miRNA:   3'- -CGCCGU------------UUUGUGUU---------UAGaCGUGCu--UG- -5'
7029 3' -45.8 NC_001875.2 + 113343 0.66 0.999944
Target:  5'- uGCGGCGggucGGGCGCGGcugcGUCgcugcgGCGCGGcGCa -3'
miRNA:   3'- -CGCCGU----UUUGUGUU----UAGa-----CGUGCU-UG- -5'
7029 3' -45.8 NC_001875.2 + 31820 0.66 0.999944
Target:  5'- cGCGGC-AAGCGCcgcGUUUGCGCu--- -3'
miRNA:   3'- -CGCCGuUUUGUGuu-UAGACGUGcuug -5'
7029 3' -45.8 NC_001875.2 + 89962 0.66 0.999944
Target:  5'- cGCGGCG----ACAGGUgUUGgACGAGCa -3'
miRNA:   3'- -CGCCGUuuugUGUUUA-GACgUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 108739 0.66 0.999944
Target:  5'- aGCGGCcuuuGGCGgGGcagCUGCACGcGGCg -3'
miRNA:   3'- -CGCCGuu--UUGUgUUua-GACGUGC-UUG- -5'
7029 3' -45.8 NC_001875.2 + 26899 0.66 0.999944
Target:  5'- -gGGCGuuACGCGcgcguUCUGCugGcGCa -3'
miRNA:   3'- cgCCGUuuUGUGUuu---AGACGugCuUG- -5'
7029 3' -45.8 NC_001875.2 + 61051 0.66 0.999944
Target:  5'- uUGGCAAAGCAUuccacuugCUGCACa--- -3'
miRNA:   3'- cGCCGUUUUGUGuuua----GACGUGcuug -5'
7029 3' -45.8 NC_001875.2 + 42465 0.66 0.999944
Target:  5'- uGCGGCGAGccACGCAGcaacacgcGCACGcGCa -3'
miRNA:   3'- -CGCCGUUU--UGUGUUuaga----CGUGCuUG- -5'
7029 3' -45.8 NC_001875.2 + 6880 0.66 0.999943
Target:  5'- aCGGCGAGuccuaccauuuguACAgAAuagUGCACGAGCa -3'
miRNA:   3'- cGCCGUUU-------------UGUgUUuagACGUGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.