Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8083 | 5' | -54 | NC_001978.2 | + | 4996 | 0.81 | 0.099683 |
Target: 5'- --aGGGAccgAAGCUCAGCGGUCGcACGCu -3' miRNA: 3'- gugCCCU---UUCGAGUUGCCGGCaUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 4188 | 0.67 | 0.626057 |
Target: 5'- aGCGGGGgcAGGCUCAGgcucCGGCUcuuCGCc -3' miRNA: 3'- gUGCCCU--UUCGAGUU----GCCGGcauGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 2909 | 0.7 | 0.452503 |
Target: 5'- gGCGGGGGcacuccccagcGCUCGACGGCauugagGCGCg -3' miRNA: 3'- gUGCCCUUu----------CGAGUUGCCGgca---UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 2332 | 0.67 | 0.659853 |
Target: 5'- gCACuGGGAAGCUC--CGGCgGaugACGCc -3' miRNA: 3'- -GUGcCCUUUCGAGuuGCCGgCa--UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 257 | 0.77 | 0.176202 |
Target: 5'- gACGGGGGcagcGGaCUCAGCGGCagCGUugGCg -3' miRNA: 3'- gUGCCCUU----UC-GAGUUGCCG--GCAugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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