miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8205 5' -56.4 NC_001978.2 + 28124 0.65 0.599671
Target:  5'- gGCugGGCGGguaUCGACcuucgGCACCCUAcguacaaccuuuacGCCg -3'
miRNA:   3'- -CGugUCGUUg--AGCUG-----CGUGGGGU--------------CGG- -5'
8205 5' -56.4 NC_001978.2 + 11862 0.66 0.591911
Target:  5'- cGCugA-CGGCUCGACGUGgCCUgaguauGGCCc -3'
miRNA:   3'- -CGugUcGUUGAGCUGCGUgGGG------UCGG- -5'
8205 5' -56.4 NC_001978.2 + 31084 0.66 0.591911
Target:  5'- cGCugAGCGACU-GACGaACgCCGGgCg -3'
miRNA:   3'- -CGugUCGUUGAgCUGCgUGgGGUCgG- -5'
8205 5' -56.4 NC_001978.2 + 38200 0.66 0.591911
Target:  5'- aCGuCAGCGGCUCGccccgUGCGCuCCCAcaucuGCCa -3'
miRNA:   3'- cGU-GUCGUUGAGCu----GCGUG-GGGU-----CGG- -5'
8205 5' -56.4 NC_001978.2 + 9687 0.66 0.590803
Target:  5'- cCugGGCAAuggccuucgucauCUCGGCGCcguucaGCCCCAuggacuuguacGCCg -3'
miRNA:   3'- cGugUCGUU-------------GAGCUGCG------UGGGGU-----------CGG- -5'
8205 5' -56.4 NC_001978.2 + 6939 0.66 0.58859
Target:  5'- cGCGCcGUcagugguuucagugGACUCGACagaaGCcgACUCCGGCCg -3'
miRNA:   3'- -CGUGuCG--------------UUGAGCUG----CG--UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 17598 0.66 0.580854
Target:  5'- gGCGacguuGGCGGCUCGAC-CACgCCUgacaAGCCc -3'
miRNA:   3'- -CGUg----UCGUUGAGCUGcGUG-GGG----UCGG- -5'
8205 5' -56.4 NC_001978.2 + 34204 0.66 0.580854
Target:  5'- gGCACGcucCGGCg-GACGCACaCCCGGgCa -3'
miRNA:   3'- -CGUGUc--GUUGagCUGCGUG-GGGUCgG- -5'
8205 5' -56.4 NC_001978.2 + 30351 0.66 0.569842
Target:  5'- gGCA-AGCGACUCagcaaggaACGCGCCgaAGCCg -3'
miRNA:   3'- -CGUgUCGUUGAGc-------UGCGUGGggUCGG- -5'
8205 5' -56.4 NC_001978.2 + 41393 0.66 0.569842
Target:  5'- uGCACAGC-GCUUGcACGUugCCUucaacgucuucGCCg -3'
miRNA:   3'- -CGUGUCGuUGAGC-UGCGugGGGu----------CGG- -5'
8205 5' -56.4 NC_001978.2 + 37943 0.66 0.569842
Target:  5'- uCACGcGCGACguuguacggGACgGCGCCCCcGCCg -3'
miRNA:   3'- cGUGU-CGUUGag-------CUG-CGUGGGGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 36727 0.66 0.547981
Target:  5'- uCACGG-AGCcggaGACgGCGCCCCAGgCCg -3'
miRNA:   3'- cGUGUCgUUGag--CUG-CGUGGGGUC-GG- -5'
8205 5' -56.4 NC_001978.2 + 13263 0.66 0.547981
Target:  5'- cCACAGCAA----GC-CGCCCCAGUCg -3'
miRNA:   3'- cGUGUCGUUgagcUGcGUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 32298 0.66 0.547981
Target:  5'- aGCGCuucGCGAa-UGGCGCgcugccgcucaGCCUCAGCCg -3'
miRNA:   3'- -CGUGu--CGUUgaGCUGCG-----------UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 39338 0.67 0.537149
Target:  5'- cGCAUucagcGCGACcCGAUcaCGCUCCGGCCg -3'
miRNA:   3'- -CGUGu----CGUUGaGCUGc-GUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 35761 0.67 0.537149
Target:  5'- uCGCc-CAGCUCGAC-CACUCCcGCCg -3'
miRNA:   3'- cGUGucGUUGAGCUGcGUGGGGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 15604 0.67 0.526391
Target:  5'- cGCaACAGCGACuUCGuACGCGCugggaCCCGGg- -3'
miRNA:   3'- -CG-UGUCGUUG-AGC-UGCGUG-----GGGUCgg -5'
8205 5' -56.4 NC_001978.2 + 26731 0.67 0.526391
Target:  5'- cCACAGCAccgcgaaacacuGCUCaGACGUauugccgguaauGCCgUAGCCg -3'
miRNA:   3'- cGUGUCGU------------UGAG-CUGCG------------UGGgGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 21225 0.67 0.526391
Target:  5'- uGUACAGCAucAUUCG-CGCugCC--GCCg -3'
miRNA:   3'- -CGUGUCGU--UGAGCuGCGugGGguCGG- -5'
8205 5' -56.4 NC_001978.2 + 8797 0.67 0.526391
Target:  5'- aGCGCAGaGACaCGAaGCGCgCCGGUCg -3'
miRNA:   3'- -CGUGUCgUUGaGCUgCGUGgGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.