miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 33782 0.66 0.537911
Target:  5'- cGCGAAGCgUGCUGGgCGcuCGACGuCGa -3'
miRNA:   3'- cCGCUUCG-GCGGCUgGCu-GCUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 30374 0.66 0.537911
Target:  5'- cGcCGAAGCCGcCCGGCUcGCGugG-Ca -3'
miRNA:   3'- cC-GCUUCGGC-GGCUGGcUGCugCuGc -5'
8224 5' -58.6 NC_001978.2 + 13815 0.66 0.537911
Target:  5'- cGGcCGGAGCCGCac-CCGugGccauucCGACGc -3'
miRNA:   3'- -CC-GCUUCGGCGgcuGGCugCu-----GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 26600 0.66 0.537911
Target:  5'- gGGCGuucgGGUCGUacuCGAUCGGCaGCGACa -3'
miRNA:   3'- -CCGCu---UCGGCG---GCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 28588 0.66 0.52752
Target:  5'- aGCGAAGCgCGCgGGCaaGugGguaACGACGu -3'
miRNA:   3'- cCGCUUCG-GCGgCUGg-CugC---UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 28804 0.66 0.52752
Target:  5'- cGGCGAAuCauCCaauCCGACGACGGCa -3'
miRNA:   3'- -CCGCUUcGgcGGcu-GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 29158 0.66 0.52752
Target:  5'- cGGCGccuGCCGCuCGACCGGaacCGuACGu -3'
miRNA:   3'- -CCGCuu-CGGCG-GCUGGCUgcuGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 27821 0.66 0.52752
Target:  5'- gGGCGGAcGCuuCGCCGaaGCCGcCGACuACGu -3'
miRNA:   3'- -CCGCUU-CG--GCGGC--UGGCuGCUGcUGC- -5'
8224 5' -58.6 NC_001978.2 + 11028 0.66 0.52752
Target:  5'- cGCGAAGUCGCCugggcgcuGCgGACGucucCGGCGu -3'
miRNA:   3'- cCGCUUCGGCGGc-------UGgCUGCu---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 17567 0.66 0.517205
Target:  5'- cGGUuacAAGCacaaGgCGACCGGCGACGuugGCGa -3'
miRNA:   3'- -CCGc--UUCGg---CgGCUGGCUGCUGC---UGC- -5'
8224 5' -58.6 NC_001978.2 + 31336 0.66 0.517205
Target:  5'- cGGCGuuGGCCGUgaCGAacUCGACGuuGGCGc -3'
miRNA:   3'- -CCGCu-UCGGCG--GCU--GGCUGCugCUGC- -5'
8224 5' -58.6 NC_001978.2 + 25919 0.66 0.506973
Target:  5'- cGUGAAGCCGacuCCGGCCGuguCGuugucaccacacACGAUGa -3'
miRNA:   3'- cCGCUUCGGC---GGCUGGCu--GC------------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 34318 0.66 0.506973
Target:  5'- cGGC-AAGCucCGCCGA-CGGCGcAUGACGu -3'
miRNA:   3'- -CCGcUUCG--GCGGCUgGCUGC-UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 39638 0.66 0.506973
Target:  5'- uGCGGacgGGUCGaCCaccuuCCGGCGACGGCa -3'
miRNA:   3'- cCGCU---UCGGC-GGcu---GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 38571 0.66 0.506973
Target:  5'- aGCGAAG-CGCCGGgcacgUCGGCguucggGACGGCGg -3'
miRNA:   3'- cCGCUUCgGCGGCU-----GGCUG------CUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 39831 0.66 0.506973
Target:  5'- -aCGAAGaCCGCgCGGCaGGCGcguACGACGg -3'
miRNA:   3'- ccGCUUC-GGCG-GCUGgCUGC---UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 37868 0.66 0.506973
Target:  5'- cGGCGggGgCGCCGucCCGuACaACGuCGc -3'
miRNA:   3'- -CCGCuuCgGCGGCu-GGC-UGcUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 20816 0.66 0.496826
Target:  5'- cGGUGAcaAGCuCGaCgGACUGAagGACGACGc -3'
miRNA:   3'- -CCGCU--UCG-GC-GgCUGGCUg-CUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 25004 0.66 0.486773
Target:  5'- cGGUccGAAGcCCGCCGACUGAgcCGGguugcCGACu -3'
miRNA:   3'- -CCG--CUUC-GGCGGCUGGCU--GCU-----GCUGc -5'
8224 5' -58.6 NC_001978.2 + 29 0.66 0.486773
Target:  5'- aGGUG-AGCCGCCGgACCcaGGCGccccccaggccaACGACc -3'
miRNA:   3'- -CCGCuUCGGCGGC-UGG--CUGC------------UGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.