Results 1 - 20 of 384 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 155259 | 0.66 | 0.972207 |
Target: 5'- cGGcGUCgACGGCucgcGGGAGCcGaGGCGGCu -3' miRNA: 3'- -CC-UAGgUGUCG----UCCUCGuCcUUGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 14484 | 0.66 | 0.972207 |
Target: 5'- uGGG-CCAgGGCAGGGcgaacaugguGCcGGGGCuGGCg -3' miRNA: 3'- -CCUaGGUgUCGUCCU----------CGuCCUUG-CCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 82847 | 0.66 | 0.972207 |
Target: 5'- cGGUCCGCGcGCAGGucCAGGAagACGu- -3' miRNA: 3'- cCUAGGUGU-CGUCCucGUCCU--UGCcg -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 132982 | 0.66 | 0.972207 |
Target: 5'- -cAUCCGCgGGUAGuAGCAGGGGaaccCGGCc -3' miRNA: 3'- ccUAGGUG-UCGUCcUCGUCCUU----GCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 49432 | 0.66 | 0.972207 |
Target: 5'- ---aCCACAuccCAGGGGCGGGgugaaaGugGGCu -3' miRNA: 3'- ccuaGGUGUc--GUCCUCGUCC------UugCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 16261 | 0.66 | 0.972207 |
Target: 5'- ---cCCGCGGCGGccaaGAGuCAGGGaccggacgcgACGGCg -3' miRNA: 3'- ccuaGGUGUCGUC----CUC-GUCCU----------UGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 174767 | 0.66 | 0.972207 |
Target: 5'- aGGAccgcguccgucUCCGCGaacucgucCAGGAGCAGGggUuggaccuucuGGCg -3' miRNA: 3'- -CCU-----------AGGUGUc-------GUCCUCGUCCuuG----------CCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 92532 | 0.66 | 0.972207 |
Target: 5'- cGGAUCUACccGGCcGcGGCGGccGCGGCg -3' miRNA: 3'- -CCUAGGUG--UCGuCcUCGUCcuUGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 118907 | 0.66 | 0.972207 |
Target: 5'- gGGGcCCGCGcuGUGGGAGaagGGGGACGuGCu -3' miRNA: 3'- -CCUaGGUGU--CGUCCUCg--UCCUUGC-CG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 118111 | 0.66 | 0.971936 |
Target: 5'- cGGA-CCggccguaucgcugACGGgggaGGGGGCGGGGGCGGa -3' miRNA: 3'- -CCUaGG-------------UGUCg---UCCUCGUCCUUGCCg -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 11385 | 0.66 | 0.971936 |
Target: 5'- gGGGUCCgACGGCucGGAcgcggacgacccGCGGGAcgaggagaugaccGCGGUc -3' miRNA: 3'- -CCUAGG-UGUCGu-CCU------------CGUCCU-------------UGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 215614 | 0.66 | 0.971936 |
Target: 5'- cGGGUCUGCGGCAGcguggccGAGCucuucgccguGGGGCuGCg -3' miRNA: 3'- -CCUAGGUGUCGUC-------CUCGu---------CCUUGcCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 160891 | 0.66 | 0.970551 |
Target: 5'- aGGGUUCgggaagcgggGCGGCcGGGGCAaGGGacgcggacagucgcuGCGGCg -3' miRNA: 3'- -CCUAGG----------UGUCGuCCUCGU-CCU---------------UGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 227996 | 0.66 | 0.969408 |
Target: 5'- aGGAgUgACAGaagagAGGAGagaaGGGAACGGUg -3' miRNA: 3'- -CCUaGgUGUCg----UCCUCg---UCCUUGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 133864 | 0.66 | 0.969408 |
Target: 5'- aGGAcgUCCugggGCGGCucgAGGAGCGGcu-CGGCc -3' miRNA: 3'- -CCU--AGG----UGUCG---UCCUCGUCcuuGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 59832 | 0.66 | 0.969408 |
Target: 5'- aGGcggCCGCGGCGGcGGCGGccAUGGCc -3' miRNA: 3'- -CCua-GGUGUCGUCcUCGUCcuUGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 227522 | 0.66 | 0.969408 |
Target: 5'- gGGAgagUCCgGCGGCggacGGGGGgAGGAG-GGCg -3' miRNA: 3'- -CCU---AGG-UGUCG----UCCUCgUCCUUgCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 47819 | 0.66 | 0.969408 |
Target: 5'- cGGAgCCGCGGCuGaGGUcGGcGCGGCu -3' miRNA: 3'- -CCUaGGUGUCGuCcUCGuCCuUGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 129848 | 0.66 | 0.969408 |
Target: 5'- uGGAggCGgaGGCGGaGGCGGaGGACGGCg -3' miRNA: 3'- -CCUagGUg-UCGUCcUCGUC-CUUGCCG- -5' |
|||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 7491 | 0.66 | 0.969408 |
Target: 5'- cGAagCCGCGGCgcuccaugAGGAGCcagagcccgccgGGGAagGCGGCc -3' miRNA: 3'- cCUa-GGUGUCG--------UCCUCG------------UCCU--UGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home