miRNA display CGI


Results 41 - 60 of 384 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 221442 0.67 0.952377
Target:  5'- cGGA-CCGCGGCcGGGGCGcGGucguccgacCGGCc -3'
miRNA:   3'- -CCUaGGUGUCGuCCUCGU-CCuu-------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 136110 0.66 0.966413
Target:  5'- cGGcggCCACAGCgacggggaGGGAGaAGGGAaaagaGGCg -3'
miRNA:   3'- -CCua-GGUGUCG--------UCCUCgUCCUUg----CCG- -5'
8943 3' -55.4 NC_002512.2 + 92532 0.66 0.972207
Target:  5'- cGGAUCUACccGGCcGcGGCGGccGCGGCg -3'
miRNA:   3'- -CCUAGGUG--UCGuCcUCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 204808 0.67 0.953934
Target:  5'- aGGUCCGCGuccCGGGGGCgcggcggcuccguccGGGAggacgACGGCg -3'
miRNA:   3'- cCUAGGUGUc--GUCCUCG---------------UCCU-----UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 118907 0.66 0.972207
Target:  5'- gGGGcCCGCGcuGUGGGAGaagGGGGACGuGCu -3'
miRNA:   3'- -CCUaGGUGU--CGUCCUCg--UCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 200814 0.68 0.929913
Target:  5'- gGGAcgCgACGGCAuGGAcgcgaaggucaGCGGGGgcGCGGCg -3'
miRNA:   3'- -CCUa-GgUGUCGU-CCU-----------CGUCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 215614 0.66 0.971936
Target:  5'- cGGGUCUGCGGCAGcguggccGAGCucuucgccguGGGGCuGCg -3'
miRNA:   3'- -CCUAGGUGUCGUC-------CUCGu---------CCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 102623 0.67 0.934857
Target:  5'- uGGAgUCgCACAGCAcccGGAGCAGGAcccCGa- -3'
miRNA:   3'- -CCU-AG-GUGUCGU---CCUCGUCCUu--GCcg -5'
8943 3' -55.4 NC_002512.2 + 189887 0.67 0.939573
Target:  5'- cGGAgacggCgGCGGCgAGGAcgGCGGcgaGGACGGCg -3'
miRNA:   3'- -CCUa----GgUGUCG-UCCU--CGUC---CUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 119542 0.67 0.944064
Target:  5'- aGGG-CUA-GGCgGGGAGCGGGGACcgGGCg -3'
miRNA:   3'- -CCUaGGUgUCG-UCCUCGUCCUUG--CCG- -5'
8943 3' -55.4 NC_002512.2 + 129502 0.67 0.944064
Target:  5'- --cUCCGCGGcCGGGaAGuCGGGAGCcGCg -3'
miRNA:   3'- ccuAGGUGUC-GUCC-UC-GUCCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 195013 0.67 0.944064
Target:  5'- cGGUCC-CGGCGGcGGCGacGACGGCg -3'
miRNA:   3'- cCUAGGuGUCGUCcUCGUccUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 131864 0.67 0.948331
Target:  5'- uGAcgCCGCGGC-GGAuCAGG-ACGGCc -3'
miRNA:   3'- cCUa-GGUGUCGuCCUcGUCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 94283 0.66 0.956204
Target:  5'- uGGcGUCCACGGCcgGGGAGCGGucguccaccCGGUu -3'
miRNA:   3'- -CC-UAGGUGUCG--UCCUCGUCcuu------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 126907 0.66 0.959816
Target:  5'- --cUCuCGCGGCGGGGGgAGGccgGGCuGGCg -3'
miRNA:   3'- ccuAG-GUGUCGUCCUCgUCC---UUG-CCG- -5'
8943 3' -55.4 NC_002512.2 + 207842 0.66 0.963218
Target:  5'- cGAUCC-CGGCgcauccucuuaaAGGAcGCcagcgaguccGGGGACGGCu -3'
miRNA:   3'- cCUAGGuGUCG------------UCCU-CG----------UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 153177 0.66 0.963218
Target:  5'- cGGG---GCGGCGGGcAGCggugGGGAggGCGGCa -3'
miRNA:   3'- -CCUaggUGUCGUCC-UCG----UCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 103699 0.66 0.966413
Target:  5'- cGGA--CGCGGCGGGAGgGGGcGCcGCc -3'
miRNA:   3'- -CCUagGUGUCGUCCUCgUCCuUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 192479 0.66 0.966413
Target:  5'- cGGAUCgAC-GCGcGGA-CGGGGACGcGCu -3'
miRNA:   3'- -CCUAGgUGuCGU-CCUcGUCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 132450 0.66 0.969408
Target:  5'- --cUCCcCGGCGGcGGGUccgGGGAGCGcGCg -3'
miRNA:   3'- ccuAGGuGUCGUC-CUCG---UCCUUGC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.