miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 4893 0.66 0.581401
Target:  5'- gGAGCGGCgacgggaagaGGGCGC-CgCCGCcGCcgcccaGCGGGu -3'
miRNA:   3'- -CUCGCCG----------UCCGCGaG-GGCG-CG------CGCCU- -5'
8943 5' -66 NC_002512.2 + 91892 0.66 0.581401
Target:  5'- cGGCGGCGcGGCGCacggCCCGCucggGCcCGGc -3'
miRNA:   3'- cUCGCCGU-CCGCGa---GGGCG----CGcGCCu -5'
8943 5' -66 NC_002512.2 + 12580 0.66 0.581401
Target:  5'- -cGCuGGCGGaGCcgaucauCUCCCgGCGCGCGGu -3'
miRNA:   3'- cuCG-CCGUC-CGc------GAGGG-CGCGCGCCu -5'
8943 5' -66 NC_002512.2 + 226685 0.66 0.581401
Target:  5'- uGAGCGcCGGGcCGUcgCCCGCG-GCGGc -3'
miRNA:   3'- -CUCGCcGUCC-GCGa-GGGCGCgCGCCu -5'
8943 5' -66 NC_002512.2 + 87982 0.66 0.581401
Target:  5'- gGGGCcGC-GGCGC-CCCGa-CGCGGAg -3'
miRNA:   3'- -CUCGcCGuCCGCGaGGGCgcGCGCCU- -5'
8943 5' -66 NC_002512.2 + 155364 0.66 0.572122
Target:  5'- cGAGCGGCgcucgaggucgGGGCgGCggcgCCgGCGggcgauCGCGGAg -3'
miRNA:   3'- -CUCGCCG-----------UCCG-CGa---GGgCGC------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 214928 0.66 0.572122
Target:  5'- -cGCGGCcgcGGCuucgucCUCCCGUGgcCGCGGAc -3'
miRNA:   3'- cuCGCCGu--CCGc-----GAGGGCGC--GCGCCU- -5'
8943 5' -66 NC_002512.2 + 222358 0.66 0.572122
Target:  5'- gGAGCGGCAcGGgGCcgccuUCCC-CG-GCGGGc -3'
miRNA:   3'- -CUCGCCGU-CCgCG-----AGGGcGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 147643 0.66 0.572122
Target:  5'- cGGCGGCGGcCGCUCCCGCuacCGUc-- -3'
miRNA:   3'- cUCGCCGUCcGCGAGGGCGc--GCGccu -5'
8943 5' -66 NC_002512.2 + 158315 0.66 0.572122
Target:  5'- -cGCGGUcguccGGCGCgagUCCGCGCucCGGAc -3'
miRNA:   3'- cuCGCCGu----CCGCGa--GGGCGCGc-GCCU- -5'
8943 5' -66 NC_002512.2 + 137992 0.66 0.562879
Target:  5'- cGAGCgGGCcGuGCGCcgcgccgccgCCCGCGC-CGGAc -3'
miRNA:   3'- -CUCG-CCGuC-CGCGa---------GGGCGCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 157157 0.66 0.562879
Target:  5'- cGGGCGGCGGGCcggGCgg-CGUGgGCGGc -3'
miRNA:   3'- -CUCGCCGUCCG---CGaggGCGCgCGCCu -5'
8943 5' -66 NC_002512.2 + 145144 0.66 0.562879
Target:  5'- uGGCcuacaGCAcGGCGCUgUCGCGCgaGCGGAu -3'
miRNA:   3'- cUCGc----CGU-CCGCGAgGGCGCG--CGCCU- -5'
8943 5' -66 NC_002512.2 + 117117 0.66 0.562879
Target:  5'- cAGCGGCAcGGgGC-CCCGuCG-GCGGc -3'
miRNA:   3'- cUCGCCGU-CCgCGaGGGC-GCgCGCCu -5'
8943 5' -66 NC_002512.2 + 82427 0.66 0.561957
Target:  5'- -cGCGGCggaggggacgaggGGGCGUcggUCCCGCucccgaagGCGgGGAa -3'
miRNA:   3'- cuCGCCG-------------UCCGCG---AGGGCG--------CGCgCCU- -5'
8943 5' -66 NC_002512.2 + 21078 0.66 0.560114
Target:  5'- cGGGCGGCGGuccCGCUCCgggGCGaccgccgucucagaCGCGGAc -3'
miRNA:   3'- -CUCGCCGUCc--GCGAGGg--CGC--------------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 40402 0.66 0.553677
Target:  5'- uGGCGGUgacggccaGGGUGUagccgaUCUCGCGCGCGa- -3'
miRNA:   3'- cUCGCCG--------UCCGCG------AGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 97394 0.66 0.553677
Target:  5'- cGGgGGCGGGCGCga-CGa-CGCGGAg -3'
miRNA:   3'- cUCgCCGUCCGCGaggGCgcGCGCCU- -5'
8943 5' -66 NC_002512.2 + 83046 0.66 0.553677
Target:  5'- cGAGCacccugGGcCAGGCGaC-CUCGCGCGCGa- -3'
miRNA:   3'- -CUCG------CC-GUCCGC-GaGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 113658 0.66 0.553677
Target:  5'- -cGCGGCcGGcCGCgagggUGCGCGCGGGu -3'
miRNA:   3'- cuCGCCGuCC-GCGagg--GCGCGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.