Results 1 - 20 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8943 | 5' | -66 | NC_002512.2 | + | 4893 | 0.66 | 0.581401 |
Target: 5'- gGAGCGGCgacgggaagaGGGCGC-CgCCGCcGCcgcccaGCGGGu -3' miRNA: 3'- -CUCGCCG----------UCCGCGaG-GGCG-CG------CGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 91892 | 0.66 | 0.581401 |
Target: 5'- cGGCGGCGcGGCGCacggCCCGCucggGCcCGGc -3' miRNA: 3'- cUCGCCGU-CCGCGa---GGGCG----CGcGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 12580 | 0.66 | 0.581401 |
Target: 5'- -cGCuGGCGGaGCcgaucauCUCCCgGCGCGCGGu -3' miRNA: 3'- cuCG-CCGUC-CGc------GAGGG-CGCGCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 226685 | 0.66 | 0.581401 |
Target: 5'- uGAGCGcCGGGcCGUcgCCCGCG-GCGGc -3' miRNA: 3'- -CUCGCcGUCC-GCGa-GGGCGCgCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 87982 | 0.66 | 0.581401 |
Target: 5'- gGGGCcGC-GGCGC-CCCGa-CGCGGAg -3' miRNA: 3'- -CUCGcCGuCCGCGaGGGCgcGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 155364 | 0.66 | 0.572122 |
Target: 5'- cGAGCGGCgcucgaggucgGGGCgGCggcgCCgGCGggcgauCGCGGAg -3' miRNA: 3'- -CUCGCCG-----------UCCG-CGa---GGgCGC------GCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 214928 | 0.66 | 0.572122 |
Target: 5'- -cGCGGCcgcGGCuucgucCUCCCGUGgcCGCGGAc -3' miRNA: 3'- cuCGCCGu--CCGc-----GAGGGCGC--GCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 222358 | 0.66 | 0.572122 |
Target: 5'- gGAGCGGCAcGGgGCcgccuUCCC-CG-GCGGGc -3' miRNA: 3'- -CUCGCCGU-CCgCG-----AGGGcGCgCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 147643 | 0.66 | 0.572122 |
Target: 5'- cGGCGGCGGcCGCUCCCGCuacCGUc-- -3' miRNA: 3'- cUCGCCGUCcGCGAGGGCGc--GCGccu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 158315 | 0.66 | 0.572122 |
Target: 5'- -cGCGGUcguccGGCGCgagUCCGCGCucCGGAc -3' miRNA: 3'- cuCGCCGu----CCGCGa--GGGCGCGc-GCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 137992 | 0.66 | 0.562879 |
Target: 5'- cGAGCgGGCcGuGCGCcgcgccgccgCCCGCGC-CGGAc -3' miRNA: 3'- -CUCG-CCGuC-CGCGa---------GGGCGCGcGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 157157 | 0.66 | 0.562879 |
Target: 5'- cGGGCGGCGGGCcggGCgg-CGUGgGCGGc -3' miRNA: 3'- -CUCGCCGUCCG---CGaggGCGCgCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 145144 | 0.66 | 0.562879 |
Target: 5'- uGGCcuacaGCAcGGCGCUgUCGCGCgaGCGGAu -3' miRNA: 3'- cUCGc----CGU-CCGCGAgGGCGCG--CGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 117117 | 0.66 | 0.562879 |
Target: 5'- cAGCGGCAcGGgGC-CCCGuCG-GCGGc -3' miRNA: 3'- cUCGCCGU-CCgCGaGGGC-GCgCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 82427 | 0.66 | 0.561957 |
Target: 5'- -cGCGGCggaggggacgaggGGGCGUcggUCCCGCucccgaagGCGgGGAa -3' miRNA: 3'- cuCGCCG-------------UCCGCG---AGGGCG--------CGCgCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 21078 | 0.66 | 0.560114 |
Target: 5'- cGGGCGGCGGuccCGCUCCgggGCGaccgccgucucagaCGCGGAc -3' miRNA: 3'- -CUCGCCGUCc--GCGAGGg--CGC--------------GCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 40402 | 0.66 | 0.553677 |
Target: 5'- uGGCGGUgacggccaGGGUGUagccgaUCUCGCGCGCGa- -3' miRNA: 3'- cUCGCCG--------UCCGCG------AGGGCGCGCGCcu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 97394 | 0.66 | 0.553677 |
Target: 5'- cGGgGGCGGGCGCga-CGa-CGCGGAg -3' miRNA: 3'- cUCgCCGUCCGCGaggGCgcGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 83046 | 0.66 | 0.553677 |
Target: 5'- cGAGCacccugGGcCAGGCGaC-CUCGCGCGCGa- -3' miRNA: 3'- -CUCG------CC-GUCCGC-GaGGGCGCGCGCcu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 113658 | 0.66 | 0.553677 |
Target: 5'- -cGCGGCcGGcCGCgagggUGCGCGCGGGu -3' miRNA: 3'- cuCGCCGuCC-GCGagg--GCGCGCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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