Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 127057 | 0.66 | 0.952052 |
Target: 5'- cCGUCUCcucgCgGACGUGcguCUUCUGCGc -3' miRNA: 3'- aGCAGAGa---GgCUGCGCu--GAGGACGCu -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 98072 | 0.66 | 0.952052 |
Target: 5'- cUCGUCUC-CCGGgaCGugUCCgaGCGGa -3' miRNA: 3'- -AGCAGAGaGGCUgcGCugAGGa-CGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 188774 | 0.66 | 0.952052 |
Target: 5'- gCGg--UUCCGGCgGCGGCUCCggccucgGCGGc -3' miRNA: 3'- aGCagaGAGGCUG-CGCUGAGGa------CGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 5754 | 0.66 | 0.952052 |
Target: 5'- cCGcCUC-CCGGCGCGGgUCCacgGcCGAg -3' miRNA: 3'- aGCaGAGaGGCUGCGCUgAGGa--C-GCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 56676 | 0.66 | 0.951664 |
Target: 5'- --cUCUCUCCGGCaagauggGCGAUUCCggUGCa- -3' miRNA: 3'- agcAGAGAGGCUG-------CGCUGAGG--ACGcu -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 77968 | 0.66 | 0.950881 |
Target: 5'- uUCGUCUCggggaCCGACGaCGGCaugCCUaccggaaacgauccGCGGa -3' miRNA: 3'- -AGCAGAGa----GGCUGC-GCUGa--GGA--------------CGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 78277 | 0.66 | 0.950487 |
Target: 5'- aCGUUguUCUCCGACGCGcggaccgugucguCUCguuuccgcgaCUGCGAg -3' miRNA: 3'- aGCAG--AGAGGCUGCGCu------------GAG----------GACGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 108168 | 0.66 | 0.948076 |
Target: 5'- gCGUCg--CCGGCGC--CUUCUGCGGc -3' miRNA: 3'- aGCAGagaGGCUGCGcuGAGGACGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 218399 | 0.66 | 0.948076 |
Target: 5'- gUCGUcCUCUCCGuCGuCGuCgUCCUcGCGGu -3' miRNA: 3'- -AGCA-GAGAGGCuGC-GCuG-AGGA-CGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 95253 | 0.66 | 0.948076 |
Target: 5'- gCGUC-CggagggCCG-CGCGGCUCCUgaacgGCGGg -3' miRNA: 3'- aGCAGaGa-----GGCuGCGCUGAGGA-----CGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 215464 | 0.66 | 0.943887 |
Target: 5'- -gGUCaUCgCCGGCGuCGACUCCUccugGCGc -3' miRNA: 3'- agCAG-AGaGGCUGC-GCUGAGGA----CGCu -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 201817 | 0.66 | 0.943887 |
Target: 5'- cCGUCUCcgCCG-CGCccgggGGCUCCUuccGCGGc -3' miRNA: 3'- aGCAGAGa-GGCuGCG-----CUGAGGA---CGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 189174 | 0.66 | 0.939483 |
Target: 5'- gCGUCUCaguUCCGACGCGuCaaagaUCUGCa- -3' miRNA: 3'- aGCAGAG---AGGCUGCGCuGa----GGACGcu -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 127259 | 0.66 | 0.939483 |
Target: 5'- -gGUCcugCUCCGGgugcugUGCGACUCCacggacgGCGAg -3' miRNA: 3'- agCAGa--GAGGCU------GCGCUGAGGa------CGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 217635 | 0.66 | 0.939483 |
Target: 5'- -gGUCUCgugCUGAUGCGGauggCCUGCu- -3' miRNA: 3'- agCAGAGa--GGCUGCGCUga--GGACGcu -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 141713 | 0.66 | 0.939483 |
Target: 5'- cUCGUC-C-CgGACGCGACcgUCCcggGCGAc -3' miRNA: 3'- -AGCAGaGaGgCUGCGCUG--AGGa--CGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 154685 | 0.66 | 0.939483 |
Target: 5'- cCGUCcgCUCCGA-GCGGCcgUCCgGCGu -3' miRNA: 3'- aGCAGa-GAGGCUgCGCUG--AGGaCGCu -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 147983 | 0.66 | 0.937661 |
Target: 5'- -gGUCUaUCCGACGUuucuuGACUCCgggagggaaaacgGCGAg -3' miRNA: 3'- agCAGAgAGGCUGCG-----CUGAGGa------------CGCU- -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 106289 | 0.66 | 0.934863 |
Target: 5'- -aGUCUUUCCGcCGCGGCgUCCUcucagacccgcaGCGc -3' miRNA: 3'- agCAGAGAGGCuGCGCUG-AGGA------------CGCu -5' |
|||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 38238 | 0.66 | 0.934863 |
Target: 5'- aCGUCUCcgCCGuCcUGGCUCCgaucggGCGAg -3' miRNA: 3'- aGCAGAGa-GGCuGcGCUGAGGa-----CGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home