miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 87267 0.66 0.903194
Target:  5'- cUCCGGGGAGcgaacACGCGgUCGugggguggacggaguCCGAGGa -3'
miRNA:   3'- aGGGCUCCUC-----UGCGC-AGCu--------------GGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 131530 0.66 0.902609
Target:  5'- gCCgGAGGgAGACGa---GGCgGAGGGg -3'
miRNA:   3'- aGGgCUCC-UCUGCgcagCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 192554 0.66 0.902609
Target:  5'- uUCCCGAca--GCGCGUCcguGGCCGGGGc -3'
miRNA:   3'- -AGGGCUccucUGCGCAG---CUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 149288 0.66 0.902609
Target:  5'- gCgCGAGGAgGGCGagauCGUCGACCGccgcgcGGGc -3'
miRNA:   3'- aGgGCUCCU-CUGC----GCAGCUGGCu-----CCC- -5'
8945 5' -59.6 NC_002512.2 + 103497 0.66 0.902609
Target:  5'- gCCCGGGGccccGGGCGCucucccgggCGGCCaGAGGa -3'
miRNA:   3'- aGGGCUCC----UCUGCGca-------GCUGG-CUCCc -5'
8945 5' -59.6 NC_002512.2 + 91909 0.66 0.902609
Target:  5'- cUCCUGGGGcggcGGCGCGccgucggCGGCCGAcuuggucuuGGGc -3'
miRNA:   3'- -AGGGCUCCu---CUGCGCa------GCUGGCU---------CCC- -5'
8945 5' -59.6 NC_002512.2 + 227233 0.66 0.896647
Target:  5'- -aCCG-GGAGGCGCGgCGGaCGGGcGGg -3'
miRNA:   3'- agGGCuCCUCUGCGCaGCUgGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 123533 0.66 0.896647
Target:  5'- gCCgCGAGGuGGCgagcucGCGggacgagCGACCGGGGa -3'
miRNA:   3'- aGG-GCUCCuCUG------CGCa------GCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 108854 0.66 0.896647
Target:  5'- gCCCaGAGGucGCGC-UCGcCCGAGGu -3'
miRNA:   3'- aGGG-CUCCucUGCGcAGCuGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 6331 0.66 0.896647
Target:  5'- cCCgCGGGGggaccGGGCGCGg-GGCCGGcGGGc -3'
miRNA:   3'- aGG-GCUCC-----UCUGCGCagCUGGCU-CCC- -5'
8945 5' -59.6 NC_002512.2 + 121855 0.66 0.896647
Target:  5'- --gCGGGGAGGacgGCGgCGGauCCGAGGGg -3'
miRNA:   3'- aggGCUCCUCUg--CGCaGCU--GGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 60846 0.66 0.896647
Target:  5'- gCCCGAGGAGAUGCcggCG-CCGcucGcGGa -3'
miRNA:   3'- aGGGCUCCUCUGCGca-GCuGGCu--C-CC- -5'
8945 5' -59.6 NC_002512.2 + 132007 0.66 0.896647
Target:  5'- ---aGGGGGGAucuCGCGUCGGCgGGcGGGu -3'
miRNA:   3'- agggCUCCUCU---GCGCAGCUGgCU-CCC- -5'
8945 5' -59.6 NC_002512.2 + 53842 0.66 0.896647
Target:  5'- aCCCGGGGGcGGCGCcggGagGAgaGGGGGa -3'
miRNA:   3'- aGGGCUCCU-CUGCG---CagCUggCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 15171 0.66 0.896647
Target:  5'- gCCCGGGcGGGCGCugaGUCaGCCuGGGGa -3'
miRNA:   3'- aGGGCUCcUCUGCG---CAGcUGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 150047 0.66 0.896647
Target:  5'- -gCCGGGGAcGACGgGgCGGgaGGGGGg -3'
miRNA:   3'- agGGCUCCU-CUGCgCaGCUggCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 135323 0.66 0.890486
Target:  5'- cCCCGAGGucg-GCGUCaGCCGcgccGGGGu -3'
miRNA:   3'- aGGGCUCCucugCGCAGcUGGC----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 39951 0.66 0.890486
Target:  5'- -aCCGAGGGGGaGCaGUCGccGCCGAGa- -3'
miRNA:   3'- agGGCUCCUCUgCG-CAGC--UGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 107169 0.66 0.890486
Target:  5'- gCCCG-GGAGG-GCGUUGauGCCGugcGGGa -3'
miRNA:   3'- aGGGCuCCUCUgCGCAGC--UGGCu--CCC- -5'
8945 5' -59.6 NC_002512.2 + 17881 0.66 0.890486
Target:  5'- gCCCGGGG-GACGUGauaggCGGcggcggccCCGAGGa -3'
miRNA:   3'- aGGGCUCCuCUGCGCa----GCU--------GGCUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.