Results 1 - 20 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8947 | 3' | -60 | NC_002512.2 | + | 225412 | 0.66 | 0.882761 |
Target: 5'- cGCCGGggUCGGGGUcgGGuuGGGGCCg -3' miRNA: 3'- cUGGCUggAGCCUCA--CCugCCCUGGg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 201347 | 0.66 | 0.882761 |
Target: 5'- uGGCCGACaUCGGGc--GGCGGcgGACCCg -3' miRNA: 3'- -CUGGCUGgAGCCUcacCUGCC--CUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 26192 | 0.66 | 0.882761 |
Target: 5'- cGACCGAUCUUaaauacagugggGGAccaccGUGGcgacggagACGGGACCg -3' miRNA: 3'- -CUGGCUGGAG------------CCU-----CACC--------UGCCCUGGg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 59433 | 0.66 | 0.882761 |
Target: 5'- uGugCG-CCaUCGuGAGcaucugccUGcGGCGGGACCCg -3' miRNA: 3'- -CugGCuGG-AGC-CUC--------AC-CUGCCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 194267 | 0.66 | 0.882761 |
Target: 5'- cGGCCG-CCgaGGAGUGGAagaUGGcGGCCa -3' miRNA: 3'- -CUGGCuGGagCCUCACCU---GCC-CUGGg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 141050 | 0.66 | 0.882761 |
Target: 5'- cACCGAUCUCGaGAugGUGuGCGGGuCCg -3' miRNA: 3'- cUGGCUGGAGC-CU--CACcUGCCCuGGg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 200335 | 0.66 | 0.878811 |
Target: 5'- cGCCGGCgUccuccugucggcggaCGGGG-GGACGGGGCg- -3' miRNA: 3'- cUGGCUGgA---------------GCCUCaCCUGCCCUGgg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 220302 | 0.66 | 0.876139 |
Target: 5'- cGCCGAgCCgcCGGGG-GGcCGGGGgCCg -3' miRNA: 3'- cUGGCU-GGa-GCCUCaCCuGCCCUgGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 98318 | 0.66 | 0.876139 |
Target: 5'- -cCCGAggggCUCGGGGccggGGACGGGgaggggggcgGCCCc -3' miRNA: 3'- cuGGCUg---GAGCCUCa---CCUGCCC----------UGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 154628 | 0.66 | 0.876139 |
Target: 5'- cGCCG-CCaUCGuGG-GGACGGGACgCg -3' miRNA: 3'- cUGGCuGG-AGCcUCaCCUGCCCUGgG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 90654 | 0.66 | 0.876139 |
Target: 5'- cGGCCGcggUCUCGGAGUcGGcggccGCGGcGGCCa -3' miRNA: 3'- -CUGGCu--GGAGCCUCA-CC-----UGCC-CUGGg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 205314 | 0.66 | 0.876139 |
Target: 5'- cGACgGACCgggagGGAGggaGGAgCGGGAUCUc -3' miRNA: 3'- -CUGgCUGGag---CCUCa--CCU-GCCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 149437 | 0.66 | 0.876139 |
Target: 5'- gGGCgGGCg-CGGGGggagaGGAagGGGACCCg -3' miRNA: 3'- -CUGgCUGgaGCCUCa----CCUg-CCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 100806 | 0.66 | 0.869328 |
Target: 5'- -cCCGuCCUCGGGGUcgaccuGGACGaGGAUg- -3' miRNA: 3'- cuGGCuGGAGCCUCA------CCUGC-CCUGgg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 117097 | 0.66 | 0.869328 |
Target: 5'- gGGCCGcCCUggaccCGGcacAGcGGcACGGGGCCCc -3' miRNA: 3'- -CUGGCuGGA-----GCC---UCaCC-UGCCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 66192 | 0.66 | 0.869328 |
Target: 5'- cGACCGGCacgcauUCGGAcaGGGCGaGGAcgucCCCg -3' miRNA: 3'- -CUGGCUGg-----AGCCUcaCCUGC-CCU----GGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 130463 | 0.66 | 0.869328 |
Target: 5'- cGGCUGAgcguCCUgGGuc-GGuCGGGGCCCg -3' miRNA: 3'- -CUGGCU----GGAgCCucaCCuGCCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 2321 | 0.66 | 0.869328 |
Target: 5'- cGCCGGCggucCGGAGgccucGGuCGcGGACCCg -3' miRNA: 3'- cUGGCUGga--GCCUCa----CCuGC-CCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 208672 | 0.66 | 0.869328 |
Target: 5'- cGGgCGGCgUccCGGGGgccgcugucccUGGACGGGuACCCg -3' miRNA: 3'- -CUgGCUGgA--GCCUC-----------ACCUGCCC-UGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 217595 | 0.66 | 0.865152 |
Target: 5'- cGCCG-CCUCGGGGgucgucggcgacucGGGCGGcGCCa -3' miRNA: 3'- cUGGCuGGAGCCUCa-------------CCUGCCcUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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