miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 194740 0.66 0.847055
Target:  5'- uGCCGAUCUCcaccGUGGGCgccagucGGGACCUg -3'
miRNA:   3'- cUGGCUGGAGccu-CACCUG-------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 194267 0.66 0.882761
Target:  5'- cGGCCG-CCgaGGAGUGGAagaUGGcGGCCa -3'
miRNA:   3'- -CUGGCuGGagCCUCACCU---GCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 192572 0.69 0.729859
Target:  5'- uGGCCGggGCCUCGGAGcGGACcGu-CCCg -3'
miRNA:   3'- -CUGGC--UGGAGCCUCaCCUGcCcuGGG- -5'
8947 3' -60 NC_002512.2 + 190743 0.72 0.522529
Target:  5'- uACUGAUCUCGGAGgccgGGACGcucuucuacguGGACCg -3'
miRNA:   3'- cUGGCUGGAGCCUCa---CCUGC-----------CCUGGg -5'
8947 3' -60 NC_002512.2 + 188143 0.68 0.774684
Target:  5'- cGCCGAgCUCaucaAGUGGAuCGGGcCCCa -3'
miRNA:   3'- cUGGCUgGAGcc--UCACCU-GCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 187005 0.67 0.840276
Target:  5'- cGGCgGGCCUguacgcgggcgUGGAGgaggaGGACGaGGACCg -3'
miRNA:   3'- -CUGgCUGGA-----------GCCUCa----CCUGC-CCUGGg -5'
8947 3' -60 NC_002512.2 + 186528 0.66 0.8478
Target:  5'- -gUCGACCUCuGcGUGcACGGGGCCg -3'
miRNA:   3'- cuGGCUGGAGcCuCACcUGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 185646 0.66 0.862331
Target:  5'- -uCCGACCUCcuGGG-GGACgucgcgGGGAUCCu -3'
miRNA:   3'- cuGGCUGGAGc-CUCaCCUG------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 185548 0.68 0.765911
Target:  5'- uACCGGCCccgCGGcGUGGccgucgAgGGGACCUg -3'
miRNA:   3'- cUGGCUGGa--GCCuCACC------UgCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 166462 0.68 0.748062
Target:  5'- cGCCGGgCUCGaGGGcgGGgacgGCGGGACCg -3'
miRNA:   3'- cUGGCUgGAGC-CUCa-CC----UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 161531 0.68 0.765911
Target:  5'- cGCCGAgCC-CGGGGacUGGAUGGuGGCCg -3'
miRNA:   3'- cUGGCU-GGaGCCUC--ACCUGCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 160753 0.7 0.683192
Target:  5'- cGCCGGCCccgggcaCGGAGgucccGGAgCGGGGCCg -3'
miRNA:   3'- cUGGCUGGa------GCCUCa----CCU-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 159356 0.68 0.765911
Target:  5'- uAUCGGCgUCGGGGUcGGggcgucccauucGCGGGuCCCg -3'
miRNA:   3'- cUGGCUGgAGCCUCA-CC------------UGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 157161 0.7 0.645153
Target:  5'- cGGCgGGCCgggCGGcGUGGGCGGcGGCgCg -3'
miRNA:   3'- -CUGgCUGGa--GCCuCACCUGCC-CUGgG- -5'
8947 3' -60 NC_002512.2 + 157125 0.72 0.569038
Target:  5'- -cCCGGCgUCGGGGgucgGcGGCGGG-CCCg -3'
miRNA:   3'- cuGGCUGgAGCCUCa---C-CUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 156438 0.67 0.824739
Target:  5'- cGGCCGGgCUgGGGGgcuccggGGGCggcggGGGACUCg -3'
miRNA:   3'- -CUGGCUgGAgCCUCa------CCUG-----CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 154628 0.66 0.876139
Target:  5'- cGCCG-CCaUCGuGG-GGACGGGACgCg -3'
miRNA:   3'- cUGGCuGG-AGCcUCaCCUGCCCUGgG- -5'
8947 3' -60 NC_002512.2 + 153169 0.68 0.773812
Target:  5'- --gCGACCUaCGGggcggcgggcagcGGUGGGgagggcggcaccCGGGACCCg -3'
miRNA:   3'- cugGCUGGA-GCC-------------UCACCU------------GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 152189 0.68 0.748062
Target:  5'- gGACCGGgguCCUCGGAgaGUGGACcccGGuCCUg -3'
miRNA:   3'- -CUGGCU---GGAGCCU--CACCUGc--CCuGGG- -5'
8947 3' -60 NC_002512.2 + 152118 0.68 0.748062
Target:  5'- -cCCGACC-CGGAGUcuGgGGGAUCCu -3'
miRNA:   3'- cuGGCUGGaGCCUCAccUgCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.