Results 1 - 20 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8952 | 5' | -62.8 | NC_002512.2 | + | 57932 | 0.66 | 0.695006 |
Target: 5'- gGACgGCgAGCGggagauagacgggcGCGGCGcGGCgGGCGAa -3' miRNA: 3'- -UUG-CGgUCGUa-------------CGCCGC-CCGgUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 100058 | 0.66 | 0.691183 |
Target: 5'- aGACGCgGGg--GCGGCGGcGCCGaCGAc -3' miRNA: 3'- -UUGCGgUCguaCGCCGCC-CGGUcGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 191483 | 0.66 | 0.691183 |
Target: 5'- aGGCGCCGGaCAgcGCGGCGa-CCGGCGc -3' miRNA: 3'- -UUGCGGUC-GUa-CGCCGCccGGUCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 9515 | 0.66 | 0.691183 |
Target: 5'- cGGCcCCAGCAcgGCGGCGGcgGCCA-CGGc -3' miRNA: 3'- -UUGcGGUCGUa-CGCCGCC--CGGUcGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 128667 | 0.66 | 0.691183 |
Target: 5'- cGGCGCCGGaacccgGCGGacgGGGCCGucGUGAu -3' miRNA: 3'- -UUGCGGUCgua---CGCCg--CCCGGU--CGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 105240 | 0.66 | 0.691183 |
Target: 5'- uGACGaUCAGCG-GCcucuucucgGGCcacaGGGCCAGCGAc -3' miRNA: 3'- -UUGC-GGUCGUaCG---------CCG----CCCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 17432 | 0.66 | 0.691183 |
Target: 5'- gGAUGCCcuccucgcGGCGgucGCGGCcGGCCGGCc- -3' miRNA: 3'- -UUGCGG--------UCGUa--CGCCGcCCGGUCGcu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 82388 | 0.66 | 0.689269 |
Target: 5'- --gGCCGGCGguggcuccgcgcGCGGgGGaGCCGGUGGu -3' miRNA: 3'- uugCGGUCGUa-----------CGCCgCC-CGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 12104 | 0.66 | 0.681597 |
Target: 5'- -cCGCCAGCcgGCcGCGaccCCGGCGAc -3' miRNA: 3'- uuGCGGUCGuaCGcCGCcc-GGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 46724 | 0.66 | 0.681597 |
Target: 5'- uACGUCauGGCGgcgGCGGCGGGgaAGCGc -3' miRNA: 3'- uUGCGG--UCGUa--CGCCGCCCggUCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 106805 | 0.66 | 0.681597 |
Target: 5'- cGACGUCGGgAgGgGGCGaGGCCGccGCGAc -3' miRNA: 3'- -UUGCGGUCgUaCgCCGC-CCGGU--CGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 24831 | 0.66 | 0.681597 |
Target: 5'- --aGCCAGUAgguccgggcccGCGGCcGGUCGGCGGc -3' miRNA: 3'- uugCGGUCGUa----------CGCCGcCCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 120612 | 0.66 | 0.681597 |
Target: 5'- gGGCGCCggugagAGCGggagGCGGCGGgacgggacGCCGGgGGc -3' miRNA: 3'- -UUGCGG------UCGUa---CGCCGCC--------CGGUCgCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 114185 | 0.66 | 0.681597 |
Target: 5'- uGGCGCCGGCGU----CGGGCcCGGCGGc -3' miRNA: 3'- -UUGCGGUCGUAcgccGCCCG-GUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 11445 | 0.66 | 0.671975 |
Target: 5'- gGACGCC-GCGgaCGG-GGGCCGGgGAa -3' miRNA: 3'- -UUGCGGuCGUacGCCgCCCGGUCgCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 33631 | 0.66 | 0.671975 |
Target: 5'- -uCGCCgaGGCGagaggcGCGcGCGGGCgCGGCGGa -3' miRNA: 3'- uuGCGG--UCGUa-----CGC-CGCCCG-GUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 98575 | 0.66 | 0.671975 |
Target: 5'- gGGCGCCu-CggGCGGCGGGUCGuccGCGc -3' miRNA: 3'- -UUGCGGucGuaCGCCGCCCGGU---CGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 227470 | 0.66 | 0.671975 |
Target: 5'- aGAgGCCGGgG-GCGGCcGGCC-GCGAg -3' miRNA: 3'- -UUgCGGUCgUaCGCCGcCCGGuCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 132572 | 0.66 | 0.671975 |
Target: 5'- cGACcCCGGCGggcGCGGCcagGGGuUCGGCGAg -3' miRNA: 3'- -UUGcGGUCGUa--CGCCG---CCC-GGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 116880 | 0.66 | 0.671975 |
Target: 5'- uGugGUC-GCGgcugGCGGCGGGgCCggGGCGGg -3' miRNA: 3'- -UugCGGuCGUa---CGCCGCCC-GG--UCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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