miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 57932 0.66 0.695006
Target:  5'- gGACgGCgAGCGggagauagacgggcGCGGCGcGGCgGGCGAa -3'
miRNA:   3'- -UUG-CGgUCGUa-------------CGCCGC-CCGgUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 17432 0.66 0.691183
Target:  5'- gGAUGCCcuccucgcGGCGgucGCGGCcGGCCGGCc- -3'
miRNA:   3'- -UUGCGG--------UCGUa--CGCCGcCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 100058 0.66 0.691183
Target:  5'- aGACGCgGGg--GCGGCGGcGCCGaCGAc -3'
miRNA:   3'- -UUGCGgUCguaCGCCGCC-CGGUcGCU- -5'
8952 5' -62.8 NC_002512.2 + 9515 0.66 0.691183
Target:  5'- cGGCcCCAGCAcgGCGGCGGcgGCCA-CGGc -3'
miRNA:   3'- -UUGcGGUCGUa-CGCCGCC--CGGUcGCU- -5'
8952 5' -62.8 NC_002512.2 + 191483 0.66 0.691183
Target:  5'- aGGCGCCGGaCAgcGCGGCGa-CCGGCGc -3'
miRNA:   3'- -UUGCGGUC-GUa-CGCCGCccGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 128667 0.66 0.691183
Target:  5'- cGGCGCCGGaacccgGCGGacgGGGCCGucGUGAu -3'
miRNA:   3'- -UUGCGGUCgua---CGCCg--CCCGGU--CGCU- -5'
8952 5' -62.8 NC_002512.2 + 105240 0.66 0.691183
Target:  5'- uGACGaUCAGCG-GCcucuucucgGGCcacaGGGCCAGCGAc -3'
miRNA:   3'- -UUGC-GGUCGUaCG---------CCG----CCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 82388 0.66 0.689269
Target:  5'- --gGCCGGCGguggcuccgcgcGCGGgGGaGCCGGUGGu -3'
miRNA:   3'- uugCGGUCGUa-----------CGCCgCC-CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 114185 0.66 0.681597
Target:  5'- uGGCGCCGGCGU----CGGGCcCGGCGGc -3'
miRNA:   3'- -UUGCGGUCGUAcgccGCCCG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 24831 0.66 0.681597
Target:  5'- --aGCCAGUAgguccgggcccGCGGCcGGUCGGCGGc -3'
miRNA:   3'- uugCGGUCGUa----------CGCCGcCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 106805 0.66 0.681597
Target:  5'- cGACGUCGGgAgGgGGCGaGGCCGccGCGAc -3'
miRNA:   3'- -UUGCGGUCgUaCgCCGC-CCGGU--CGCU- -5'
8952 5' -62.8 NC_002512.2 + 46724 0.66 0.681597
Target:  5'- uACGUCauGGCGgcgGCGGCGGGgaAGCGc -3'
miRNA:   3'- uUGCGG--UCGUa--CGCCGCCCggUCGCu -5'
8952 5' -62.8 NC_002512.2 + 12104 0.66 0.681597
Target:  5'- -cCGCCAGCcgGCcGCGaccCCGGCGAc -3'
miRNA:   3'- uuGCGGUCGuaCGcCGCcc-GGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 120612 0.66 0.681597
Target:  5'- gGGCGCCggugagAGCGggagGCGGCGGgacgggacGCCGGgGGc -3'
miRNA:   3'- -UUGCGG------UCGUa---CGCCGCC--------CGGUCgCU- -5'
8952 5' -62.8 NC_002512.2 + 132572 0.66 0.671975
Target:  5'- cGACcCCGGCGggcGCGGCcagGGGuUCGGCGAg -3'
miRNA:   3'- -UUGcGGUCGUa--CGCCG---CCC-GGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 227470 0.66 0.671975
Target:  5'- aGAgGCCGGgG-GCGGCcGGCC-GCGAg -3'
miRNA:   3'- -UUgCGGUCgUaCGCCGcCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 116880 0.66 0.671975
Target:  5'- uGugGUC-GCGgcugGCGGCGGGgCCggGGCGGg -3'
miRNA:   3'- -UugCGGuCGUa---CGCCGCCC-GG--UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 11445 0.66 0.671975
Target:  5'- gGACGCC-GCGgaCGG-GGGCCGGgGAa -3'
miRNA:   3'- -UUGCGGuCGUacGCCgCCCGGUCgCU- -5'
8952 5' -62.8 NC_002512.2 + 33631 0.66 0.671975
Target:  5'- -uCGCCgaGGCGagaggcGCGcGCGGGCgCGGCGGa -3'
miRNA:   3'- uuGCGG--UCGUa-----CGC-CGCCCG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 98575 0.66 0.671975
Target:  5'- gGGCGCCu-CggGCGGCGGGUCGuccGCGc -3'
miRNA:   3'- -UUGCGGucGuaCGCCGCCCGGU---CGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.