Results 1 - 20 of 451 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8953 | 3' | -66.3 | NC_002512.2 | + | 86323 | 0.66 | 0.622444 |
Target: 5'- cCGCCGgccCGCCCGcGGGGagaCGCGcggCCgCCGa -3' miRNA: 3'- -GCGGC---GCGGGC-UCCUg--GCGCa--GG-GGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 117037 | 0.66 | 0.622444 |
Target: 5'- gGCCGgGaguucgCCGAGaugacGGCCGUGUCCCUc -3' miRNA: 3'- gCGGCgCg-----GGCUC-----CUGGCGCAGGGGc -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 140264 | 0.66 | 0.622444 |
Target: 5'- gGCCgagucuucgGCGCCCGAGcgccCCGCGgacgUUCCCGc -3' miRNA: 3'- gCGG---------CGCGGGCUCcu--GGCGC----AGGGGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 108514 | 0.66 | 0.622444 |
Target: 5'- gGCCcgGCGCCCGAccGGCCGgGgaCCCGa -3' miRNA: 3'- gCGG--CGCGGGCUc-CUGGCgCagGGGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 125733 | 0.66 | 0.622444 |
Target: 5'- gCGCCuuccUGUCCG-GG-UCGCGUCCCCc -3' miRNA: 3'- -GCGGc---GCGGGCuCCuGGCGCAGGGGc -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 174911 | 0.66 | 0.622444 |
Target: 5'- uCGCacaGCGCCUG-GGuCaGCGUCUCCa -3' miRNA: 3'- -GCGg--CGCGGGCuCCuGgCGCAGGGGc -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 130872 | 0.66 | 0.622444 |
Target: 5'- uCGCCgacGCGCCCuaucGGGGCCGCG-CagaggCCGg -3' miRNA: 3'- -GCGG---CGCGGGc---UCCUGGCGCaGg----GGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 215079 | 0.66 | 0.622444 |
Target: 5'- -aCCGCGUcggcgggaCCGAGGACUuCGUCgCCGc -3' miRNA: 3'- gcGGCGCG--------GGCUCCUGGcGCAGgGGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 112559 | 0.66 | 0.622444 |
Target: 5'- aCGCCgGCGCCagcGGGAacCCGCcGUCCguCCGg -3' miRNA: 3'- -GCGG-CGCGGgc-UCCU--GGCG-CAGG--GGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 218499 | 0.66 | 0.622444 |
Target: 5'- uCGuCCGCGUCCGAgccgucGGACCccuCGUCgUCCGa -3' miRNA: 3'- -GC-GGCGCGGGCU------CCUGGc--GCAG-GGGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 39674 | 0.66 | 0.622444 |
Target: 5'- gGCCGU-CCCGGacGACCGCG-CCgCCGa -3' miRNA: 3'- gCGGCGcGGGCUc-CUGGCGCaGG-GGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 225488 | 0.66 | 0.622444 |
Target: 5'- uCGaCCGCGaucuaCGGGGccGCCGCGggggUCCCGg -3' miRNA: 3'- -GC-GGCGCgg---GCUCC--UGGCGCa---GGGGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 164482 | 0.66 | 0.622444 |
Target: 5'- cCGCCGaGCUaCGAGGACUccaCGUCCCa- -3' miRNA: 3'- -GCGGCgCGG-GCUCCUGGc--GCAGGGgc -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 94961 | 0.66 | 0.622444 |
Target: 5'- uCGCuCGCGUUCaGGuGGCUGCGgaucgCCCCGu -3' miRNA: 3'- -GCG-GCGCGGGcUC-CUGGCGCa----GGGGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 73380 | 0.66 | 0.622444 |
Target: 5'- gCGCCccgcCGCCC-AGGccGCCGUGUCCgCCc -3' miRNA: 3'- -GCGGc---GCGGGcUCC--UGGCGCAGG-GGc -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 143525 | 0.66 | 0.622444 |
Target: 5'- gGgCGCGCCUGGcGGCCuCGUCgCCGu -3' miRNA: 3'- gCgGCGCGGGCUcCUGGcGCAGgGGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 217501 | 0.66 | 0.621527 |
Target: 5'- cCGCCGcCGCCCGAaggcgagcucgggGGGUCGCGguUCaCCUGg -3' miRNA: 3'- -GCGGC-GCGGGCU-------------CCUGGCGC--AG-GGGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 222574 | 0.66 | 0.621527 |
Target: 5'- cCGCCGCgGCCCgccgucgcgGAGGAggccuguCCG-GcCCCCGg -3' miRNA: 3'- -GCGGCG-CGGG---------CUCCU-------GGCgCaGGGGC- -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 37874 | 0.66 | 0.621527 |
Target: 5'- -cCCGCGCCCGccAGGACgGUcuuccgcagcuggGUCCUCu -3' miRNA: 3'- gcGGCGCGGGC--UCCUGgCG-------------CAGGGGc -5' |
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8953 | 3' | -66.3 | NC_002512.2 | + | 61146 | 0.66 | 0.619692 |
Target: 5'- cCGCaGCGCCUgcacggccugcaagGAGGGCacgaGC-UCCCCGa -3' miRNA: 3'- -GCGgCGCGGG--------------CUCCUGg---CGcAGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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