miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 197178 0.66 0.920031
Target:  5'- cGCGccucuucguccucauGGAcccgcuCGGGGCCGUCUACgGCUUc -3'
miRNA:   3'- cCGCu--------------CCU------GCUCCGGCAGAUGaCGAA- -5'
8953 5' -57.7 NC_002512.2 + 134861 0.66 0.919487
Target:  5'- cGCGAcgucucGGGCGAcGCCGUCggggaccuggACUGCUc -3'
miRNA:   3'- cCGCU------CCUGCUcCGGCAGa---------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 165001 0.66 0.913915
Target:  5'- cGGcCGAcGGA-GAGGCCGUCcccccCUGCg- -3'
miRNA:   3'- -CC-GCU-CCUgCUCCGGCAGau---GACGaa -5'
8953 5' -57.7 NC_002512.2 + 110724 0.66 0.913915
Target:  5'- uGGCGuuGGCcaGGGCCGUgUugUGCa- -3'
miRNA:   3'- -CCGCucCUGc-UCCGGCAgAugACGaa -5'
8953 5' -57.7 NC_002512.2 + 99913 0.66 0.910466
Target:  5'- gGGCGccgggggcccgccgaAGGGCGGcGUCGgCUGCUGCUg -3'
miRNA:   3'- -CCGC---------------UCCUGCUcCGGCaGAUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 192616 0.66 0.908122
Target:  5'- cGGCGGGcGACGGcGGCCucaccuUCUACgGCa- -3'
miRNA:   3'- -CCGCUC-CUGCU-CCGGc-----AGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 129613 0.66 0.908122
Target:  5'- cGCGGaucACGAGGCCGUCgACcGCUUu -3'
miRNA:   3'- cCGCUcc-UGCUCCGGCAGaUGaCGAA- -5'
8953 5' -57.7 NC_002512.2 + 227898 0.66 0.902108
Target:  5'- gGGCGAGucCGAGGCCGgagACggacGCg- -3'
miRNA:   3'- -CCGCUCcuGCUCCGGCagaUGa---CGaa -5'
8953 5' -57.7 NC_002512.2 + 24305 0.66 0.901495
Target:  5'- cGGCG-GGGCGAacugcggucccccGGCgGUCggGCUGUUg -3'
miRNA:   3'- -CCGCuCCUGCU-------------CCGgCAGa-UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 122934 0.66 0.895876
Target:  5'- aGGaCGAGGACGAGGaggacuCCGUCgACgagGUg- -3'
miRNA:   3'- -CC-GCUCCUGCUCC------GGCAGaUGa--CGaa -5'
8953 5' -57.7 NC_002512.2 + 43595 0.66 0.895876
Target:  5'- cGGCGucgcGGACGAGGaCgCGgagGCUGCg- -3'
miRNA:   3'- -CCGCu---CCUGCUCC-G-GCagaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 166213 0.66 0.892033
Target:  5'- cGGCGAGGA--GGGCCG-CgcgcgcguggggaagUACUGCg- -3'
miRNA:   3'- -CCGCUCCUgcUCCGGCaG---------------AUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 117021 0.66 0.889429
Target:  5'- gGGCcgGAGGACGcGGCCaUCgagcuguucggGCUGCUg -3'
miRNA:   3'- -CCG--CUCCUGCuCCGGcAGa----------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 200369 0.66 0.889429
Target:  5'- gGGCGGGGGgugaGGGGCgGgg-GCUGCa- -3'
miRNA:   3'- -CCGCUCCUg---CUCCGgCagaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 154586 0.67 0.882769
Target:  5'- cGGCGAGGGCGAcGGCggcauCGUCgccGCcGCc- -3'
miRNA:   3'- -CCGCUCCUGCU-CCG-----GCAGa--UGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 98575 0.67 0.882769
Target:  5'- gGGCGccucGGGCGgcGGGUCGUCcgcGCUGCa- -3'
miRNA:   3'- -CCGCu---CCUGC--UCCGGCAGa--UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 80009 0.67 0.875902
Target:  5'- aGCGGcagccggagccGGACGAGG-CGUC-GCUGCUUu -3'
miRNA:   3'- cCGCU-----------CCUGCUCCgGCAGaUGACGAA- -5'
8953 5' -57.7 NC_002512.2 + 145498 0.67 0.875902
Target:  5'- cGCaGAGGACGcuGCCGgg-GCUGCUc -3'
miRNA:   3'- cCG-CUCCUGCucCGGCagaUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 199505 0.67 0.875902
Target:  5'- cGCGAGGAucagguCGAGGUCGUCgg--GCg- -3'
miRNA:   3'- cCGCUCCU------GCUCCGGCAGaugaCGaa -5'
8953 5' -57.7 NC_002512.2 + 81989 0.67 0.868831
Target:  5'- cGGCGGGGGCGucucggGGGCgGUC-GCgGCg- -3'
miRNA:   3'- -CCGCUCCUGC------UCCGgCAGaUGaCGaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.