miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 22581 0.66 0.851289
Target:  5'- gGUGAacgGCUCGGAGGCcac-GGUGCu -3'
miRNA:   3'- gCGCUg--CGGGCCUCCGcuauCCACGc -5'
8954 3' -60.6 NC_002512.2 + 81993 0.66 0.851289
Target:  5'- gGgGGCGUCuCGGGGGCGGUcgcgGCGa -3'
miRNA:   3'- gCgCUGCGG-GCCUCCGCUAuccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 100653 0.66 0.851289
Target:  5'- aCGCGggaugguacAgGUCCGuGAGGUaGUAGGUGCu -3'
miRNA:   3'- -GCGC---------UgCGGGC-CUCCGcUAUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 155350 0.66 0.851289
Target:  5'- cCGCGGCcGCCUGGcuguaccucgucAGGCGGgaccgcgAGGcugGCGa -3'
miRNA:   3'- -GCGCUG-CGGGCC------------UCCGCUa------UCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 206561 0.66 0.851289
Target:  5'- cCGcCGGCgGCCCGG-GGCGccagaacugcAGGUGCc -3'
miRNA:   3'- -GC-GCUG-CGGGCCuCCGCua--------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 103489 0.66 0.851289
Target:  5'- uCGaCGGCGCCCGG-GGCcccGGGcGCu -3'
miRNA:   3'- -GC-GCUGCGGGCCuCCGcuaUCCaCGc -5'
8954 3' -60.6 NC_002512.2 + 123131 0.66 0.851289
Target:  5'- gGCGGcCGuCCCGGGGGaCG--GGGcgGCGg -3'
miRNA:   3'- gCGCU-GC-GGGCCUCC-GCuaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 80862 0.66 0.851289
Target:  5'- aCGCGGgGCUCGGugucGGGCGGUccGcgGCGg -3'
miRNA:   3'- -GCGCUgCGGGCC----UCCGCUAucCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 50853 0.66 0.851289
Target:  5'- gCGCuGACGUCCGcGGaccugcuacuGGCGGgaaAGGUGCu -3'
miRNA:   3'- -GCG-CUGCGGGC-CU----------CCGCUa--UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 227506 0.66 0.84383
Target:  5'- aCGCcGCGaCCCGGGGGgGAgaguccGGcgGCGg -3'
miRNA:   3'- -GCGcUGC-GGGCCUCCgCUau----CCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 6395 0.66 0.84383
Target:  5'- uCGCGACggGCagGGAGGCGGcggcggcgcUGGGgaagGCGg -3'
miRNA:   3'- -GCGCUG--CGggCCUCCGCU---------AUCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 101044 0.66 0.84383
Target:  5'- gCGCGGCGCCCGa--GCGGUgcAGcUGCGc -3'
miRNA:   3'- -GCGCUGCGGGCcucCGCUA--UCcACGC- -5'
8954 3' -60.6 NC_002512.2 + 81873 0.66 0.84383
Target:  5'- aGCGACagagGCCCagGGAGGCcGU-GGUGUa -3'
miRNA:   3'- gCGCUG----CGGG--CCUCCGcUAuCCACGc -5'
8954 3' -60.6 NC_002512.2 + 201823 0.66 0.840798
Target:  5'- cCGCcGCGCCCGGGGGCuccuuccGCGg -3'
miRNA:   3'- -GCGcUGCGGGCCUCCGcuauccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 115574 0.66 0.836202
Target:  5'- aGCGugGCgCUGGAGcaccuGCGccGGGUGUa -3'
miRNA:   3'- gCGCugCG-GGCCUC-----CGCuaUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 103325 0.66 0.836202
Target:  5'- gGcCGAgGCCCGGGcGGCGuagcccGGG-GCGg -3'
miRNA:   3'- gC-GCUgCGGGCCU-CCGCua----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 126581 0.66 0.836202
Target:  5'- gGCGaACGCCCGGAucuGG-GAcAGGUcccgGCGg -3'
miRNA:   3'- gCGC-UGCGGGCCU---CCgCUaUCCA----CGC- -5'
8954 3' -60.6 NC_002512.2 + 84277 0.66 0.836202
Target:  5'- aGCGGgccgaacgccCGCCUGGAGGUguucaucaGGUAGuUGCGg -3'
miRNA:   3'- gCGCU----------GCGGGCCUCCG--------CUAUCcACGC- -5'
8954 3' -60.6 NC_002512.2 + 127252 0.66 0.833882
Target:  5'- gGCGACGgCCGGAacGGCGAcGGcGUucccccgggcguugGCGg -3'
miRNA:   3'- gCGCUGCgGGCCU--CCGCUaUC-CA--------------CGC- -5'
8954 3' -60.6 NC_002512.2 + 108394 0.66 0.833105
Target:  5'- gGCGA-GCCCGGuGGGUGggGGGgaggacggggacgGCGg -3'
miRNA:   3'- gCGCUgCGGGCC-UCCGCuaUCCa------------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.