miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 114485 0.66 0.713059
Target:  5'- aUGGCCGUCa-CCGCguUCUCCuuGCUCa -3'
miRNA:   3'- cGCCGGCAGggGGCGauGGAGG--CGAG- -5'
8959 3' -63.6 NC_002512.2 + 70957 0.66 0.713059
Target:  5'- gGCcGCCGgcgCCCCCGCcgaaGCCguacucggCCGCg- -3'
miRNA:   3'- -CGcCGGCa--GGGGGCGa---UGGa-------GGCGag -5'
8959 3' -63.6 NC_002512.2 + 126411 0.66 0.713059
Target:  5'- cGCGGCCG-CCgCCGagACCcgagCCGCg- -3'
miRNA:   3'- -CGCCGGCaGGgGGCgaUGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 21080 0.66 0.713059
Target:  5'- gGCGGCgGUCCCgcuCCGggGCgaCCGC-Cg -3'
miRNA:   3'- -CGCCGgCAGGG---GGCgaUGgaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 225034 0.66 0.713059
Target:  5'- cGCGGCgaa-CCCCGCgaugGCCg-CGCUCc -3'
miRNA:   3'- -CGCCGgcagGGGGCGa---UGGagGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 46017 0.66 0.713059
Target:  5'- aCGGUCGUCgUgUCGCUGaauCCUuuGCUCg -3'
miRNA:   3'- cGCCGGCAG-GgGGCGAU---GGAggCGAG- -5'
8959 3' -63.6 NC_002512.2 + 60825 0.66 0.713059
Target:  5'- cGCcGCCGcggagCCCCuCGCgcccgaggagaUGCCggcgCCGCUCg -3'
miRNA:   3'- -CGcCGGCa----GGGG-GCG-----------AUGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 134345 0.66 0.713059
Target:  5'- cGCGGCCGagcUCCagaCCCGC-ACCguccacgagCUGUUCg -3'
miRNA:   3'- -CGCCGGC---AGG---GGGCGaUGGa--------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 214235 0.66 0.711219
Target:  5'- gGCGGCuCGUcggcucgCCgCCCGCgGCCgaggaguUCCGCUg -3'
miRNA:   3'- -CGCCG-GCA-------GG-GGGCGaUGG-------AGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 227847 0.66 0.703836
Target:  5'- cGCaGCCGaUCaCCCUGCUGucgcuCCUCCuggugccgGCUCa -3'
miRNA:   3'- -CGcCGGC-AG-GGGGCGAU-----GGAGG--------CGAG- -5'
8959 3' -63.6 NC_002512.2 + 222517 0.66 0.703836
Target:  5'- cUGGCCG-CCCgCCGCgGCCgCCGUc- -3'
miRNA:   3'- cGCCGGCaGGG-GGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 204676 0.66 0.703836
Target:  5'- gGCGGCuCG-CUCCCGCU-CCgUCGCg- -3'
miRNA:   3'- -CGCCG-GCaGGGGGCGAuGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 179998 0.66 0.703836
Target:  5'- cGUGGCCcgugaUCCCCCaGCgggACUcgaUCaCGCUCg -3'
miRNA:   3'- -CGCCGGc----AGGGGG-CGa--UGG---AG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 100699 0.66 0.703836
Target:  5'- gGCGGCC-UCCUCCGCagcguCC-CCGUg- -3'
miRNA:   3'- -CGCCGGcAGGGGGCGau---GGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 194621 0.66 0.703836
Target:  5'- cGCGGCCGUCg-CCGCgggggACCUgcCCGUccUCu -3'
miRNA:   3'- -CGCCGGCAGggGGCGa----UGGA--GGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 194570 0.66 0.70291
Target:  5'- -aGGCCGUgCCCcucaaggucaaCCGCUAcaugaagaugaucCCUCCGC-Cg -3'
miRNA:   3'- cgCCGGCA-GGG-----------GGCGAU-------------GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 98249 0.66 0.701058
Target:  5'- cGCGGaccCCGUacuucccguccuugCCCCCGCg----CCGCUCg -3'
miRNA:   3'- -CGCC---GGCA--------------GGGGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 184597 0.66 0.700131
Target:  5'- gGCGGuCCGUCCgaCCCGCgagacgagcgcgaGCCcCCGC-Cg -3'
miRNA:   3'- -CGCC-GGCAGG--GGGCGa------------UGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 17453 0.66 0.694561
Target:  5'- cGCGGCCGgCCggCCCGaacucgACCUcCCGCcCg -3'
miRNA:   3'- -CGCCGGCaGG--GGGCga----UGGA-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 45337 0.66 0.694561
Target:  5'- -gGGCCGUCCgccggCCCGCgccgccggcugACC-CCGCg- -3'
miRNA:   3'- cgCCGGCAGG-----GGGCGa----------UGGaGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.