Results 1 - 20 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8959 | 3' | -63.6 | NC_002512.2 | + | 114485 | 0.66 | 0.713059 |
Target: 5'- aUGGCCGUCa-CCGCguUCUCCuuGCUCa -3' miRNA: 3'- cGCCGGCAGggGGCGauGGAGG--CGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 70957 | 0.66 | 0.713059 |
Target: 5'- gGCcGCCGgcgCCCCCGCcgaaGCCguacucggCCGCg- -3' miRNA: 3'- -CGcCGGCa--GGGGGCGa---UGGa-------GGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 126411 | 0.66 | 0.713059 |
Target: 5'- cGCGGCCG-CCgCCGagACCcgagCCGCg- -3' miRNA: 3'- -CGCCGGCaGGgGGCgaUGGa---GGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 21080 | 0.66 | 0.713059 |
Target: 5'- gGCGGCgGUCCCgcuCCGggGCgaCCGC-Cg -3' miRNA: 3'- -CGCCGgCAGGG---GGCgaUGgaGGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 225034 | 0.66 | 0.713059 |
Target: 5'- cGCGGCgaa-CCCCGCgaugGCCg-CGCUCc -3' miRNA: 3'- -CGCCGgcagGGGGCGa---UGGagGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 46017 | 0.66 | 0.713059 |
Target: 5'- aCGGUCGUCgUgUCGCUGaauCCUuuGCUCg -3' miRNA: 3'- cGCCGGCAG-GgGGCGAU---GGAggCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 60825 | 0.66 | 0.713059 |
Target: 5'- cGCcGCCGcggagCCCCuCGCgcccgaggagaUGCCggcgCCGCUCg -3' miRNA: 3'- -CGcCGGCa----GGGG-GCG-----------AUGGa---GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 134345 | 0.66 | 0.713059 |
Target: 5'- cGCGGCCGagcUCCagaCCCGC-ACCguccacgagCUGUUCg -3' miRNA: 3'- -CGCCGGC---AGG---GGGCGaUGGa--------GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 214235 | 0.66 | 0.711219 |
Target: 5'- gGCGGCuCGUcggcucgCCgCCCGCgGCCgaggaguUCCGCUg -3' miRNA: 3'- -CGCCG-GCA-------GG-GGGCGaUGG-------AGGCGAg -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 227847 | 0.66 | 0.703836 |
Target: 5'- cGCaGCCGaUCaCCCUGCUGucgcuCCUCCuggugccgGCUCa -3' miRNA: 3'- -CGcCGGC-AG-GGGGCGAU-----GGAGG--------CGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 222517 | 0.66 | 0.703836 |
Target: 5'- cUGGCCG-CCCgCCGCgGCCgCCGUc- -3' miRNA: 3'- cGCCGGCaGGG-GGCGaUGGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 204676 | 0.66 | 0.703836 |
Target: 5'- gGCGGCuCG-CUCCCGCU-CCgUCGCg- -3' miRNA: 3'- -CGCCG-GCaGGGGGCGAuGGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 179998 | 0.66 | 0.703836 |
Target: 5'- cGUGGCCcgugaUCCCCCaGCgggACUcgaUCaCGCUCg -3' miRNA: 3'- -CGCCGGc----AGGGGG-CGa--UGG---AG-GCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 100699 | 0.66 | 0.703836 |
Target: 5'- gGCGGCC-UCCUCCGCagcguCC-CCGUg- -3' miRNA: 3'- -CGCCGGcAGGGGGCGau---GGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 194621 | 0.66 | 0.703836 |
Target: 5'- cGCGGCCGUCg-CCGCgggggACCUgcCCGUccUCu -3' miRNA: 3'- -CGCCGGCAGggGGCGa----UGGA--GGCG--AG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 194570 | 0.66 | 0.70291 |
Target: 5'- -aGGCCGUgCCCcucaaggucaaCCGCUAcaugaagaugaucCCUCCGC-Cg -3' miRNA: 3'- cgCCGGCA-GGG-----------GGCGAU-------------GGAGGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 98249 | 0.66 | 0.701058 |
Target: 5'- cGCGGaccCCGUacuucccguccuugCCCCCGCg----CCGCUCg -3' miRNA: 3'- -CGCC---GGCA--------------GGGGGCGauggaGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 184597 | 0.66 | 0.700131 |
Target: 5'- gGCGGuCCGUCCgaCCCGCgagacgagcgcgaGCCcCCGC-Cg -3' miRNA: 3'- -CGCC-GGCAGG--GGGCGa------------UGGaGGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 17453 | 0.66 | 0.694561 |
Target: 5'- cGCGGCCGgCCggCCCGaacucgACCUcCCGCcCg -3' miRNA: 3'- -CGCCGGCaGG--GGGCga----UGGA-GGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 45337 | 0.66 | 0.694561 |
Target: 5'- -gGGCCGUCCgccggCCCGCgccgccggcugACC-CCGCg- -3' miRNA: 3'- cgCCGGCAGG-----GGGCGa----------UGGaGGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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