miRNA display CGI


Results 41 - 60 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 199929 0.67 0.600486
Target:  5'- cGCGGCCGgCCgCCGCUcACCggCUGUcCa -3'
miRNA:   3'- -CGCCGGCaGGgGGCGA-UGGa-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 198727 0.68 0.591088
Target:  5'- gGCGGUgCGUCUCCCGg-GCCaggUCCGCg- -3'
miRNA:   3'- -CGCCG-GCAGGGGGCgaUGG---AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 197340 0.66 0.684307
Target:  5'- gGCGGCUGgagaagaUCCCCCaCUGCCcgcacgUCUGCa- -3'
miRNA:   3'- -CGCCGGC-------AGGGGGcGAUGG------AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 197162 0.69 0.525393
Target:  5'- aCGGCCGUCUuccaCCCGCgccucuucguCCUcauggacCCGCUCg -3'
miRNA:   3'- cGCCGGCAGG----GGGCGau--------GGA-------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 196196 0.68 0.572373
Target:  5'- aCGGCCGggUCCCUgGCgaGCCUCCGg-- -3'
miRNA:   3'- cGCCGGC--AGGGGgCGa-UGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 196075 0.67 0.619336
Target:  5'- cGgGGCCuUCgCCCUGCUcgcgcuCCUCUGCUg -3'
miRNA:   3'- -CgCCGGcAG-GGGGCGAu-----GGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 194939 0.66 0.657086
Target:  5'- cGCGGCCGcuccgCuCCCCGUcGCCgcgaccCCGCcgUCg -3'
miRNA:   3'- -CGCCGGCa----G-GGGGCGaUGGa-----GGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 194621 0.66 0.703836
Target:  5'- cGCGGCCGUCg-CCGCgggggACCUgcCCGUccUCu -3'
miRNA:   3'- -CGCCGGCAGggGGCGa----UGGA--GGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 194570 0.66 0.70291
Target:  5'- -aGGCCGUgCCCcucaaggucaaCCGCUAcaugaagaugaucCCUCCGC-Cg -3'
miRNA:   3'- cgCCGGCA-GGG-----------GGCGAU-------------GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 193760 0.69 0.535415
Target:  5'- cGCGGUCGUCgCCuCCGU--CCUCUGUUUu -3'
miRNA:   3'- -CGCCGGCAG-GG-GGCGauGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 192954 0.8 0.116536
Target:  5'- cGCGGCCucGUCCCCCGgguCCUCcCGCUCu -3'
miRNA:   3'- -CGCCGG--CAGGGGGCgauGGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 192909 0.66 0.694561
Target:  5'- cGCGGCgGUCCagaGCcGCCUCCGa-- -3'
miRNA:   3'- -CGCCGgCAGGgggCGaUGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 192587 0.7 0.438997
Target:  5'- aGCGGaCCGUCCCgCUGCUGCggCgCGCg- -3'
miRNA:   3'- -CGCC-GGCAGGG-GGCGAUGgaG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 192164 0.69 0.490474
Target:  5'- cGCGGCCccugCCCUCGCUGuCCguccugcgCCGCg- -3'
miRNA:   3'- -CGCCGGca--GGGGGCGAU-GGa-------GGCGag -5'
8959 3' -63.6 NC_002512.2 + 191668 0.66 0.694561
Target:  5'- -aGGCCGU-CUCCGCUAUCgUCGCg- -3'
miRNA:   3'- cgCCGGCAgGGGGCGAUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 191481 0.73 0.31842
Target:  5'- aGCGGCCGUCUUCuCGUacagACC-CUGCUCa -3'
miRNA:   3'- -CGCCGGCAGGGG-GCGa---UGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 190568 0.68 0.571441
Target:  5'- gGCGGCCGUCUUCCacaccgacaacGUguggACCUuccugcggaucagCCGCUCg -3'
miRNA:   3'- -CGCCGGCAGGGGG-----------CGa---UGGA-------------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 188680 0.66 0.663676
Target:  5'- cGCGGCgGUCUCggggacgaucacggCgGCU-CCUCCGcCUCg -3'
miRNA:   3'- -CGCCGgCAGGG--------------GgCGAuGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 187574 0.66 0.666497
Target:  5'- cGCGcGUCGagauccCCCCCGCUcCCUCUGUc- -3'
miRNA:   3'- -CGC-CGGCa-----GGGGGCGAuGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 186792 0.71 0.414441
Target:  5'- uCGaGCCGU-CCCCGCUGCUcgCCGCg- -3'
miRNA:   3'- cGC-CGGCAgGGGGCGAUGGa-GGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.