miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 110748 0.66 0.921558
Target:  5'- gCAGGCGgaagGACGGCucGGCGugaucCCGCGc -3'
miRNA:   3'- gGUUCGCg---UUGCCGuuCCGC-----GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 4793 0.66 0.921558
Target:  5'- gCCGGuUGCGACGGUugcugcGGCagcuGCUGCGGg -3'
miRNA:   3'- -GGUUcGCGUUGCCGuu----CCG----CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 92734 0.66 0.921558
Target:  5'- -gGGGCGCGcuCGGUccgauGGCGCCGacgaCGGg -3'
miRNA:   3'- ggUUCGCGUu-GCCGuu---CCGCGGC----GCC- -5'
8961 5' -58.3 NC_002512.2 + 20221 0.66 0.921558
Target:  5'- -aGGGC-CAGCGGCAucaucgacagGGGCacGCCGCa- -3'
miRNA:   3'- ggUUCGcGUUGCCGU----------UCCG--CGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 78645 0.66 0.921558
Target:  5'- aCCGAGaugaugGCGuCGGuCGAgccGGCGCCGgGGc -3'
miRNA:   3'- -GGUUCg-----CGUuGCC-GUU---CCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 106750 0.66 0.921558
Target:  5'- cCCGgcGGCGCuccgcgucCGGCucucGGC-CCGCGGc -3'
miRNA:   3'- -GGU--UCGCGuu------GCCGuu--CCGcGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 136206 0.66 0.921558
Target:  5'- gUCGAcGC-CGGCGGCcuGGUGC-GCGGg -3'
miRNA:   3'- -GGUU-CGcGUUGCCGuuCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 3984 0.66 0.921558
Target:  5'- gUCGAcGCGCuccucgggaGGCGggGGGCGUCGCaGGa -3'
miRNA:   3'- -GGUU-CGCGuug------CCGU--UCCGCGGCG-CC- -5'
8961 5' -58.3 NC_002512.2 + 57102 0.66 0.921558
Target:  5'- aCCGAGCGgGacgaggaaGCGGgGGGuGCGCCGaCa- -3'
miRNA:   3'- -GGUUCGCgU--------UGCCgUUC-CGCGGC-Gcc -5'
8961 5' -58.3 NC_002512.2 + 100058 0.66 0.921558
Target:  5'- uCCAu-CGCGACGG---GG-GCCGCGGg -3'
miRNA:   3'- -GGUucGCGUUGCCguuCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 11252 0.66 0.921558
Target:  5'- gCCGGGCGCGACagGGUcccGAcGCGCguccuucgagucCGCGGg -3'
miRNA:   3'- -GGUUCGCGUUG--CCG---UUcCGCG------------GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 112885 0.66 0.921558
Target:  5'- gCCcGGCGUucucguCGGuCGccGCGUCGCGGa -3'
miRNA:   3'- -GGuUCGCGuu----GCC-GUucCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 221251 0.66 0.921029
Target:  5'- gCCGGcCGCGGCGgaagucgggggacGCGGGGCG-CGUGGa -3'
miRNA:   3'- -GGUUcGCGUUGC-------------CGUUCCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 104840 0.66 0.919965
Target:  5'- aCgAGGCGgAagguaucgucccucACGGCGAccucGGCcCCGCGGg -3'
miRNA:   3'- -GgUUCGCgU--------------UGCCGUU----CCGcGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 226749 0.66 0.91943
Target:  5'- aCCGGGCuccggccggacgacGCGGagGGCGAGGacgucucgggcgaCGCCGUGGu -3'
miRNA:   3'- -GGUUCG--------------CGUUg-CCGUUCC-------------GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 189610 0.66 0.91943
Target:  5'- uUCGuGCGCGGCGGCcgcacgcgauCGUCGCGGu -3'
miRNA:   3'- -GGUuCGCGUUGCCGuucc------GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 12285 0.66 0.916173
Target:  5'- cCCGAGuCGcCGACgacccccgaGGC--GGCGCCGcCGGa -3'
miRNA:   3'- -GGUUC-GC-GUUG---------CCGuuCCGCGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 28704 0.66 0.916173
Target:  5'- aCgAAGCGguGCaGCGAGGgGUCcCGGc -3'
miRNA:   3'- -GgUUCGCguUGcCGUUCCgCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 122655 0.66 0.916173
Target:  5'- uUCGAGCcggaCGACGGUGAccgcGGCuccccgGCCGCGGc -3'
miRNA:   3'- -GGUUCGc---GUUGCCGUU----CCG------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 64629 0.66 0.916173
Target:  5'- uCCGGGgcucCGCGACGcguccGCGAGGUcguggaucacGUCGCGGa -3'
miRNA:   3'- -GGUUC----GCGUUGC-----CGUUCCG----------CGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.