miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 80298 0.66 0.881628
Target:  5'- -gUCCUCGUCguCGGCGgucuCGGUCcCCuCCu -3'
miRNA:   3'- cgAGGAGCAG--GCCGU----GCCAGuGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 187874 0.66 0.881628
Target:  5'- aGCUCCU-GUCU-GUAC-GUCACCGaCCg -3'
miRNA:   3'- -CGAGGAgCAGGcCGUGcCAGUGGC-GG- -5'
8963 3' -59.9 NC_002512.2 + 193149 0.66 0.881628
Target:  5'- -gUCCUCGUCCuGGC-CGGcgucuggaUCGgCGCg -3'
miRNA:   3'- cgAGGAGCAGG-CCGuGCC--------AGUgGCGg -5'
8963 3' -59.9 NC_002512.2 + 153289 0.66 0.881628
Target:  5'- gGCUCCgcugggUCgGUCCGGguCGGcCGguucCCGCUg -3'
miRNA:   3'- -CGAGG------AG-CAGGCCguGCCaGU----GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 38907 0.66 0.881628
Target:  5'- uCUUCUCGgcgaCGGCcCGGagggGCCGCCg -3'
miRNA:   3'- cGAGGAGCag--GCCGuGCCag--UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 128023 0.66 0.881628
Target:  5'- gGCUgCUgCGgCCGGguCGcUCGCUGCCu -3'
miRNA:   3'- -CGAgGA-GCaGGCCguGCcAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 219534 0.66 0.881628
Target:  5'- -gUCUUCGU-CGGCgugcccaccggACGGUCuuCGCCg -3'
miRNA:   3'- cgAGGAGCAgGCCG-----------UGCCAGugGCGG- -5'
8963 3' -59.9 NC_002512.2 + 216416 0.66 0.881628
Target:  5'- cGCagCagGUCCGGgGacgccaGGcUCGCCGCCg -3'
miRNA:   3'- -CGagGagCAGGCCgUg-----CC-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 42776 0.66 0.881628
Target:  5'- uGCcCCUgGUCCacguagGGCuguCGGUCgACgGCCa -3'
miRNA:   3'- -CGaGGAgCAGG------CCGu--GCCAG-UGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 161900 0.66 0.881628
Target:  5'- uCUCCUCGcgCCGGCccuccuccgGCGGa---CGCCa -3'
miRNA:   3'- cGAGGAGCa-GGCCG---------UGCCagugGCGG- -5'
8963 3' -59.9 NC_002512.2 + 31149 0.66 0.881628
Target:  5'- -gUCUUCGcggacCUGGCcCGGgagacgCACCGCCu -3'
miRNA:   3'- cgAGGAGCa----GGCCGuGCCa-----GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 134273 0.66 0.881628
Target:  5'- cUUCgUCGUCCGcGCGgGGUC-CCGg- -3'
miRNA:   3'- cGAGgAGCAGGC-CGUgCCAGuGGCgg -5'
8963 3' -59.9 NC_002512.2 + 150662 0.66 0.881628
Target:  5'- aGCUcgagCCUCGaggUCCgcgGGCgcgGCGGUCGCC-CCg -3'
miRNA:   3'- -CGA----GGAGC---AGG---CCG---UGCCAGUGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 151568 0.66 0.880971
Target:  5'- cUUCC-CGagagCCGGCGaggagauCGGUCAUgGCCg -3'
miRNA:   3'- cGAGGaGCa---GGCCGU-------GCCAGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 45184 0.66 0.87965
Target:  5'- -gUCCUCGgaggUCucgaccgggaccggCGGCGCGGacgGCCGCCg -3'
miRNA:   3'- cgAGGAGC----AG--------------GCCGUGCCag-UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 215055 0.66 0.878987
Target:  5'- aGCUCaccgUCGUCggCGGCgucuaccgcgucgGCGGgaccgaggacuucgUCGCCGCCg -3'
miRNA:   3'- -CGAGg---AGCAG--GCCG-------------UGCC--------------AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 81433 0.66 0.877655
Target:  5'- gGCUCCgucccgCGgggggcCCGGCccccguccucccccgGCGGUC-CCGCa -3'
miRNA:   3'- -CGAGGa-----GCa-----GGCCG---------------UGCCAGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 101609 0.66 0.874969
Target:  5'- gGCggCCgUCGgcCCGGCgccgggacGCGaGUCGCCGCUc -3'
miRNA:   3'- -CGa-GG-AGCa-GGCCG--------UGC-CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 139076 0.66 0.874969
Target:  5'- --aCCUCGUCCGcGUugaagaucgaGCGGaUCGUCGCCc -3'
miRNA:   3'- cgaGGAGCAGGC-CG----------UGCC-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 190181 0.66 0.874969
Target:  5'- -aUCCUCGUCgaaCGucccggguucuaGCGCGGUCGggucCUGCCa -3'
miRNA:   3'- cgAGGAGCAG---GC------------CGUGCCAGU----GGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.