miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 14903 0.66 0.901907
Target:  5'- aCgGGCaUCCCGA---GGUCGG-CGUCGg -3'
miRNA:   3'- -GgCCG-GGGGCUagcUCAGCCuGCAGC- -5'
8964 3' -60 NC_002512.2 + 101320 0.66 0.901907
Target:  5'- gUCGGCCCCCGGaggccgUCGAaggUGGACa--- -3'
miRNA:   3'- -GGCCGGGGGCU------AGCUca-GCCUGcagc -5'
8964 3' -60 NC_002512.2 + 144570 0.66 0.901907
Target:  5'- aCCGGCgaCCUacGUCGAG-CGGcagGCGUCGa -3'
miRNA:   3'- -GGCCGg-GGGc-UAGCUCaGCC---UGCAGC- -5'
8964 3' -60 NC_002512.2 + 60359 0.66 0.901907
Target:  5'- gCCGGgaCCCGuUCGAGcUGGACG-CGu -3'
miRNA:   3'- -GGCCggGGGCuAGCUCaGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 223229 0.66 0.901907
Target:  5'- cCCGGCCggCUCGGugcacuUCGAcuccUCGGGCGUCc -3'
miRNA:   3'- -GGCCGG--GGGCU------AGCUc---AGCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 47591 0.66 0.901907
Target:  5'- cCCGGUCCCUGAcggccaGGGagCGGACGg-- -3'
miRNA:   3'- -GGCCGGGGGCUag----CUCa-GCCUGCagc -5'
8964 3' -60 NC_002512.2 + 82396 0.66 0.895966
Target:  5'- gUGGCUCCgCGcgCGGGggagcCGGugGUCc -3'
miRNA:   3'- gGCCGGGG-GCuaGCUCa----GCCugCAGc -5'
8964 3' -60 NC_002512.2 + 222472 0.66 0.895966
Target:  5'- gCCGGCCCUcgCGGUCGucaacguggCGGugGcCGc -3'
miRNA:   3'- -GGCCGGGG--GCUAGCuca------GCCugCaGC- -5'
8964 3' -60 NC_002512.2 + 140273 0.66 0.895966
Target:  5'- uUCGGCgCCCGAgCGccccgCGGACGUUc -3'
miRNA:   3'- -GGCCGgGGGCUaGCuca--GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 21216 0.66 0.895966
Target:  5'- gCGGCCCCCGGgacgccgccCGGGgCGGAgaCGggggCGg -3'
miRNA:   3'- gGCCGGGGGCUa--------GCUCaGCCU--GCa---GC- -5'
8964 3' -60 NC_002512.2 + 219681 0.66 0.895966
Target:  5'- gCGcGCCgCCCGAggaCGAGgaGGAgCGUCGg -3'
miRNA:   3'- gGC-CGG-GGGCUa--GCUCagCCU-GCAGC- -5'
8964 3' -60 NC_002512.2 + 56363 0.66 0.895966
Target:  5'- aCGGCCCCgacggacgGAUCG-G-CGGACGgCGg -3'
miRNA:   3'- gGCCGGGGg-------CUAGCuCaGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 122002 0.66 0.895966
Target:  5'- aUCGGCgCCCGGagGGGcCGGAgG-CGg -3'
miRNA:   3'- -GGCCGgGGGCUagCUCaGCCUgCaGC- -5'
8964 3' -60 NC_002512.2 + 6118 0.66 0.895966
Target:  5'- uCCGGUCCCuCGAccUCGcugucGUCGGACa--- -3'
miRNA:   3'- -GGCCGGGG-GCU--AGCu----CAGCCUGcagc -5'
8964 3' -60 NC_002512.2 + 136902 0.66 0.895966
Target:  5'- aCGGCCaCCaGGUCGGG-CG-ACGUCa -3'
miRNA:   3'- gGCCGG-GGgCUAGCUCaGCcUGCAGc -5'
8964 3' -60 NC_002512.2 + 79857 0.66 0.895966
Target:  5'- cCCGGCCCCC--UCGuccUCGGAgGagGa -3'
miRNA:   3'- -GGCCGGGGGcuAGCuc-AGCCUgCagC- -5'
8964 3' -60 NC_002512.2 + 135230 0.66 0.895966
Target:  5'- cCCGGCCCCgGGcCGccUCGaGGcCGUCGu -3'
miRNA:   3'- -GGCCGGGGgCUaGCucAGC-CU-GCAGC- -5'
8964 3' -60 NC_002512.2 + 77157 0.66 0.895966
Target:  5'- uCCGaccGCCCCCGAagcuuaauaaaUCGAuucuucgCGGACGaUCGa -3'
miRNA:   3'- -GGC---CGGGGGCU-----------AGCUca-----GCCUGC-AGC- -5'
8964 3' -60 NC_002512.2 + 85079 0.66 0.890452
Target:  5'- gUGGCCCCCGuAggcguugaggaaccaCGAGggGGAgGUCGg -3'
miRNA:   3'- gGCCGGGGGC-Ua--------------GCUCagCCUgCAGC- -5'
8964 3' -60 NC_002512.2 + 124599 0.66 0.88983
Target:  5'- cCCuGUCCCuCGucuUCGGcGUCGGcgGCGUCGg -3'
miRNA:   3'- -GGcCGGGG-GCu--AGCU-CAGCC--UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.