Results 1 - 20 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8966 | 3' | -61 | NC_002512.2 | + | 14569 | 0.66 | 0.821316 |
Target: 5'- -gAGGaaGCCGGUGCCguagucgccgcaGCCCGUcUCCc -3' miRNA: 3'- caUCCagUGGUCGCGG------------CGGGCGcAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 1870 | 0.66 | 0.821316 |
Target: 5'- --cGGUCGCCcc--UCGuCCCGCGUCCc -3' miRNA: 3'- cauCCAGUGGucgcGGC-GGGCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 8129 | 0.66 | 0.821316 |
Target: 5'- --cGGcCGcCCAGCuGCCGUUcgacggCGCGUCCg -3' miRNA: 3'- cauCCaGU-GGUCG-CGGCGG------GCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 40364 | 0.66 | 0.821316 |
Target: 5'- -cGGG--GCCuGCGCCGCUCG-GUCUc -3' miRNA: 3'- caUCCagUGGuCGCGGCGGGCgCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 219349 | 0.66 | 0.821316 |
Target: 5'- -cAGGUCAUUugauUGCaCGCUCGCGUUCa -3' miRNA: 3'- caUCCAGUGGuc--GCG-GCGGGCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 103479 | 0.66 | 0.821316 |
Target: 5'- -cGGGUC-UCGGCGgCGgCCGCGgaCCg -3' miRNA: 3'- caUCCAGuGGUCGCgGCgGGCGCa-GG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 33473 | 0.66 | 0.821316 |
Target: 5'- -----aC-CCGGcCGCCGCCCcccGCGUCCc -3' miRNA: 3'- cauccaGuGGUC-GCGGCGGG---CGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 180595 | 0.66 | 0.821316 |
Target: 5'- cGUGGcguccGUCACaCAGCGUCGgaguccgaguUCCGCGaUCCg -3' miRNA: 3'- -CAUC-----CAGUG-GUCGCGGC----------GGGCGC-AGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 40275 | 0.66 | 0.821316 |
Target: 5'- ----aUCGCguGCgGCCGCCCGCGcacgaacgucgUCCc -3' miRNA: 3'- cauccAGUGguCG-CGGCGGGCGC-----------AGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 3705 | 0.66 | 0.821316 |
Target: 5'- -gAGGUCGacCCGGuCGCUcCCCGgGUCg -3' miRNA: 3'- caUCCAGU--GGUC-GCGGcGGGCgCAGg -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 103118 | 0.66 | 0.821316 |
Target: 5'- ---cGUCGCCGcCGCCGCC-GCGcCCc -3' miRNA: 3'- caucCAGUGGUcGCGGCGGgCGCaGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 192881 | 0.66 | 0.821316 |
Target: 5'- -gGGGaCGCauauaAGCGCCGUCgCGC-UCCg -3' miRNA: 3'- caUCCaGUGg----UCGCGGCGG-GCGcAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 82181 | 0.66 | 0.821316 |
Target: 5'- -aGGGUCGagAGC-CCGUCCGcCGUCg -3' miRNA: 3'- caUCCAGUggUCGcGGCGGGC-GCAGg -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 165941 | 0.66 | 0.821316 |
Target: 5'- -cGGGUCuACCAGaaggaCGCCGgCCGCuUCa -3' miRNA: 3'- caUCCAG-UGGUC-----GCGGCgGGCGcAGg -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 80733 | 0.66 | 0.820512 |
Target: 5'- -cGGGcggCACCGGCcCCGCggcggucCCGgGUCCc -3' miRNA: 3'- caUCCa--GUGGUCGcGGCG-------GGCgCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 198962 | 0.66 | 0.813207 |
Target: 5'- --cGGUCGCgUGGCGUCGCgUCGCGugaugUCCg -3' miRNA: 3'- cauCCAGUG-GUCGCGGCG-GGCGC-----AGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 117511 | 0.66 | 0.813207 |
Target: 5'- -aAGGcCGCCAcCGCCaucguGCCCaagGUGUCCg -3' miRNA: 3'- caUCCaGUGGUcGCGG-----CGGG---CGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 217584 | 0.66 | 0.813207 |
Target: 5'- --cGGUcCGgCGGCGCCGCCUcggGgGUCg -3' miRNA: 3'- cauCCA-GUgGUCGCGGCGGG---CgCAGg -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 3448 | 0.66 | 0.813207 |
Target: 5'- --uGGUCGgugaCGGCGaCGaagguCCCGCGUCCg -3' miRNA: 3'- cauCCAGUg---GUCGCgGC-----GGGCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 118536 | 0.66 | 0.813207 |
Target: 5'- -cGGGUCGuCCucGUGCgCGCCCGgGacgCCa -3' miRNA: 3'- caUCCAGU-GGu-CGCG-GCGGGCgCa--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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