miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 14569 0.66 0.821316
Target:  5'- -gAGGaaGCCGGUGCCguagucgccgcaGCCCGUcUCCc -3'
miRNA:   3'- caUCCagUGGUCGCGG------------CGGGCGcAGG- -5'
8966 3' -61 NC_002512.2 + 1870 0.66 0.821316
Target:  5'- --cGGUCGCCcc--UCGuCCCGCGUCCc -3'
miRNA:   3'- cauCCAGUGGucgcGGC-GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 8129 0.66 0.821316
Target:  5'- --cGGcCGcCCAGCuGCCGUUcgacggCGCGUCCg -3'
miRNA:   3'- cauCCaGU-GGUCG-CGGCGG------GCGCAGG- -5'
8966 3' -61 NC_002512.2 + 40364 0.66 0.821316
Target:  5'- -cGGG--GCCuGCGCCGCUCG-GUCUc -3'
miRNA:   3'- caUCCagUGGuCGCGGCGGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 219349 0.66 0.821316
Target:  5'- -cAGGUCAUUugauUGCaCGCUCGCGUUCa -3'
miRNA:   3'- caUCCAGUGGuc--GCG-GCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 103479 0.66 0.821316
Target:  5'- -cGGGUC-UCGGCGgCGgCCGCGgaCCg -3'
miRNA:   3'- caUCCAGuGGUCGCgGCgGGCGCa-GG- -5'
8966 3' -61 NC_002512.2 + 33473 0.66 0.821316
Target:  5'- -----aC-CCGGcCGCCGCCCcccGCGUCCc -3'
miRNA:   3'- cauccaGuGGUC-GCGGCGGG---CGCAGG- -5'
8966 3' -61 NC_002512.2 + 180595 0.66 0.821316
Target:  5'- cGUGGcguccGUCACaCAGCGUCGgaguccgaguUCCGCGaUCCg -3'
miRNA:   3'- -CAUC-----CAGUG-GUCGCGGC----------GGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 40275 0.66 0.821316
Target:  5'- ----aUCGCguGCgGCCGCCCGCGcacgaacgucgUCCc -3'
miRNA:   3'- cauccAGUGguCG-CGGCGGGCGC-----------AGG- -5'
8966 3' -61 NC_002512.2 + 3705 0.66 0.821316
Target:  5'- -gAGGUCGacCCGGuCGCUcCCCGgGUCg -3'
miRNA:   3'- caUCCAGU--GGUC-GCGGcGGGCgCAGg -5'
8966 3' -61 NC_002512.2 + 103118 0.66 0.821316
Target:  5'- ---cGUCGCCGcCGCCGCC-GCGcCCc -3'
miRNA:   3'- caucCAGUGGUcGCGGCGGgCGCaGG- -5'
8966 3' -61 NC_002512.2 + 192881 0.66 0.821316
Target:  5'- -gGGGaCGCauauaAGCGCCGUCgCGC-UCCg -3'
miRNA:   3'- caUCCaGUGg----UCGCGGCGG-GCGcAGG- -5'
8966 3' -61 NC_002512.2 + 82181 0.66 0.821316
Target:  5'- -aGGGUCGagAGC-CCGUCCGcCGUCg -3'
miRNA:   3'- caUCCAGUggUCGcGGCGGGC-GCAGg -5'
8966 3' -61 NC_002512.2 + 165941 0.66 0.821316
Target:  5'- -cGGGUCuACCAGaaggaCGCCGgCCGCuUCa -3'
miRNA:   3'- caUCCAG-UGGUC-----GCGGCgGGCGcAGg -5'
8966 3' -61 NC_002512.2 + 80733 0.66 0.820512
Target:  5'- -cGGGcggCACCGGCcCCGCggcggucCCGgGUCCc -3'
miRNA:   3'- caUCCa--GUGGUCGcGGCG-------GGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 198962 0.66 0.813207
Target:  5'- --cGGUCGCgUGGCGUCGCgUCGCGugaugUCCg -3'
miRNA:   3'- cauCCAGUG-GUCGCGGCG-GGCGC-----AGG- -5'
8966 3' -61 NC_002512.2 + 117511 0.66 0.813207
Target:  5'- -aAGGcCGCCAcCGCCaucguGCCCaagGUGUCCg -3'
miRNA:   3'- caUCCaGUGGUcGCGG-----CGGG---CGCAGG- -5'
8966 3' -61 NC_002512.2 + 217584 0.66 0.813207
Target:  5'- --cGGUcCGgCGGCGCCGCCUcggGgGUCg -3'
miRNA:   3'- cauCCA-GUgGUCGCGGCGGG---CgCAGg -5'
8966 3' -61 NC_002512.2 + 3448 0.66 0.813207
Target:  5'- --uGGUCGgugaCGGCGaCGaagguCCCGCGUCCg -3'
miRNA:   3'- cauCCAGUg---GUCGCgGC-----GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 118536 0.66 0.813207
Target:  5'- -cGGGUCGuCCucGUGCgCGCCCGgGacgCCa -3'
miRNA:   3'- caUCCAGU-GGu-CGCG-GCGGGCgCa--GG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.