miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 142620 0.66 0.744343
Target:  5'- --cGACCGCGuGUUCGCUCC-CCGgaGa -3'
miRNA:   3'- cccCUGGCGU-CAAGCGGGGcGGCgaC- -5'
8967 5' -63 NC_002512.2 + 183515 0.66 0.744343
Target:  5'- gGGGaGGCCGUcc-UCGCCUgGCUGCg- -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 106305 0.66 0.744343
Target:  5'- --cGACCGCGGgcccgUCGUccagCCCGUCGCUc -3'
miRNA:   3'- cccCUGGCGUCa----AGCG----GGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 57174 0.66 0.744343
Target:  5'- cGGGuuGCCGCAGggCaCCUCGCgGCa- -3'
miRNA:   3'- cCCC--UGGCGUCaaGcGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 192880 0.66 0.744343
Target:  5'- cGGGGACgcauauaagCGCcGUcgCGCUCCGCgGCg- -3'
miRNA:   3'- -CCCCUG---------GCGuCAa-GCGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 115900 0.66 0.744343
Target:  5'- cGGGACCau-GUUCaCCCUGCUGCa- -3'
miRNA:   3'- cCCCUGGcguCAAGcGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 218993 0.66 0.744343
Target:  5'- cGGGGuCCGCAac-CGCCUCcuccagcacuGCUGCUGc -3'
miRNA:   3'- -CCCCuGGCGUcaaGCGGGG----------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 27457 0.66 0.744343
Target:  5'- uGGGGAcuCCGCGGgucaCGCCacuguuCCGCgCGCg- -3'
miRNA:   3'- -CCCCU--GGCGUCaa--GCGG------GGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 110207 0.66 0.744343
Target:  5'- aGGGGugCG-GGUgUCGCUuaaugagggCCGCCGCg- -3'
miRNA:   3'- -CCCCugGCgUCA-AGCGG---------GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 77535 0.66 0.744343
Target:  5'- cGGGACCGgAGa-CGCCUaCGUCGCg- -3'
miRNA:   3'- cCCCUGGCgUCaaGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 28030 0.66 0.743446
Target:  5'- -cGGACCGCAG---GCCCCaggcgagcugccgGCCGCg- -3'
miRNA:   3'- ccCCUGGCGUCaagCGGGG-------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 75293 0.66 0.743446
Target:  5'- cGGcGGcgacgauGCCGCcg-UCGCCCuCGCCGUUa -3'
miRNA:   3'- -CC-CC-------UGGCGucaAGCGGG-GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 217942 0.66 0.741649
Target:  5'- uGGGGACCgggGCGGggaacgacugccuaUUUGCCgagCGCCGCUu -3'
miRNA:   3'- -CCCCUGG---CGUC--------------AAGCGGg--GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 61725 0.66 0.738947
Target:  5'- cGGGGGCCGC-GUccccucUCcgccccccacccccaGCCCCucGCCGCg- -3'
miRNA:   3'- -CCCCUGGCGuCA------AG---------------CGGGG--CGGCGac -5'
8967 5' -63 NC_002512.2 + 48289 0.66 0.735334
Target:  5'- aGGaGGACguCGCGGacccgcCGCCCCuGCCGCc- -3'
miRNA:   3'- -CC-CCUG--GCGUCaa----GCGGGG-CGGCGac -5'
8967 5' -63 NC_002512.2 + 37270 0.66 0.735334
Target:  5'- aGGuGaGGCCGCcg-UCG-CCCGCCGCg- -3'
miRNA:   3'- -CC-C-CUGGCGucaAGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 171906 0.66 0.726248
Target:  5'- cGGGACuCGgugauaGGUUCGUcgcccucuucgCCCGCCGCg- -3'
miRNA:   3'- cCCCUG-GCg-----UCAAGCG-----------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 99659 0.66 0.726248
Target:  5'- cGGGGCC-CAGagguuCCCCGCCGCc- -3'
miRNA:   3'- cCCCUGGcGUCaagc-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 24481 0.66 0.726248
Target:  5'- aGGaGGcGCCGgAGUUcCGCUgCGCCGCc- -3'
miRNA:   3'- -CC-CC-UGGCgUCAA-GCGGgGCGGCGac -5'
8967 5' -63 NC_002512.2 + 127409 0.66 0.726248
Target:  5'- cGGGACCGCcaccgcgacgGGcgCGCCCUccuCCGCg- -3'
miRNA:   3'- cCCCUGGCG----------UCaaGCGGGGc--GGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.