Results 1 - 20 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 197229 | 0.65 | 0.982592 |
Target: 5'- aCUGCcucaaccgcaucuACCGCCuGGc-CGACAGCuUCa -3' miRNA: 3'- aGACG-------------UGGUGGuCCuuGCUGUCGuAG- -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 154559 | 0.65 | 0.981999 |
Target: 5'- cUCgGuCGCCAUgggggggCAGGAuaacggcgagggcgACGGCGGCAUCg -3' miRNA: 3'- -AGaC-GUGGUG-------GUCCU--------------UGCUGUCGUAG- -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 109349 | 0.66 | 0.981595 |
Target: 5'- cUCUGCgagggaGCCGCCGGGGGaaagccgcgccucccCGucaccgcgaucgGCGGCGUCg -3' miRNA: 3'- -AGACG------UGGUGGUCCUU---------------GC------------UGUCGUAG- -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 28252 | 0.66 | 0.980767 |
Target: 5'- --cGCGCCGCgAGu-ACGACGGCGc- -3' miRNA: 3'- agaCGUGGUGgUCcuUGCUGUCGUag -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 116963 | 0.66 | 0.980767 |
Target: 5'- --cGCGCCACCGGGccgcCGACGcccCGUCc -3' miRNA: 3'- agaCGUGGUGGUCCuu--GCUGUc--GUAG- -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 121304 | 0.66 | 0.980767 |
Target: 5'- --cGCucuCCGCCcGGAaccacaGCGACAGCAc- -3' miRNA: 3'- agaCGu--GGUGGuCCU------UGCUGUCGUag -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 125546 | 0.66 | 0.980767 |
Target: 5'- --cGCGgCACCAGGAAC-ACGGUg-- -3' miRNA: 3'- agaCGUgGUGGUCCUUGcUGUCGuag -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 100681 | 0.66 | 0.980767 |
Target: 5'- uUCUcCGCgGCCAGcGGCGGCGGCcUCc -3' miRNA: 3'- -AGAcGUGgUGGUCcUUGCUGUCGuAG- -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 122880 | 0.66 | 0.980767 |
Target: 5'- --cGUcgGCCGCCuaccgagaGGGAgacgacgaggACGACGGCAUCu -3' miRNA: 3'- agaCG--UGGUGG--------UCCU----------UGCUGUCGUAG- -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 185560 | 0.66 | 0.980767 |
Target: 5'- --gGCgugGCCgucgaggggACCuGGAACGGCAGCAUg -3' miRNA: 3'- agaCG---UGG---------UGGuCCUUGCUGUCGUAg -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 128876 | 0.66 | 0.980767 |
Target: 5'- gCUGCGCCugCugAGGGACGAgacgggccUGGCgAUCc -3' miRNA: 3'- aGACGUGGugG--UCCUUGCU--------GUCG-UAG- -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 219404 | 0.66 | 0.980128 |
Target: 5'- gUCgGC-CCGCCGcgacgcccacgcccGGGGCGGCGGCGg- -3' miRNA: 3'- -AGaCGuGGUGGU--------------CCUUGCUGUCGUag -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 168446 | 0.66 | 0.979473 |
Target: 5'- --gGcCACCAgCAGGAucugcucuaugcacuGCGACGGCAc- -3' miRNA: 3'- agaC-GUGGUgGUCCU---------------UGCUGUCGUag -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 184880 | 0.66 | 0.978575 |
Target: 5'- gCUGCuacuGCCACgGGGucagcgGGCGGCGGCGc- -3' miRNA: 3'- aGACG----UGGUGgUCC------UUGCUGUCGUag -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 200158 | 0.66 | 0.978575 |
Target: 5'- --cGCGCCGCCAcGGuaggGCGACAcgGUCa -3' miRNA: 3'- agaCGUGGUGGU-CCu---UGCUGUcgUAG- -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 132583 | 0.66 | 0.978575 |
Target: 5'- --gGCGCgGCCAGGGguuCGGCgAGCAg- -3' miRNA: 3'- agaCGUGgUGGUCCUu--GCUG-UCGUag -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 206191 | 0.66 | 0.978575 |
Target: 5'- --gGCACggaCACCAGGAagcaGCGGCGGUg-- -3' miRNA: 3'- agaCGUG---GUGGUCCU----UGCUGUCGuag -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 90468 | 0.66 | 0.978575 |
Target: 5'- gCUGCggguccccgAUCACCGGGGcguccuCGACGGgAUCg -3' miRNA: 3'- aGACG---------UGGUGGUCCUu-----GCUGUCgUAG- -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 110812 | 0.66 | 0.978575 |
Target: 5'- --cGCGCgACCGGucGAGgGACAGCAg- -3' miRNA: 3'- agaCGUGgUGGUC--CUUgCUGUCGUag -5' |
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8970 | 5' | -54.1 | NC_002512.2 | + | 192603 | 0.66 | 0.978575 |
Target: 5'- gCUGCGgCGCgcgCGGcGGGCGACGGCGg- -3' miRNA: 3'- aGACGUgGUG---GUC-CUUGCUGUCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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