miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 152792 0.66 0.998819
Target:  5'- gCCUccgUCUCGgaggUCCGCGGcgACGGCgggCGgCg -3'
miRNA:   3'- -GGA---AGAGC----AGGCGCU--UGUCGaa-GUgG- -5'
8972 3' -51.5 NC_002512.2 + 91807 0.66 0.998819
Target:  5'- --gUCUCGUCaGCGcAGCAGuCUcguguucgUCACCc -3'
miRNA:   3'- ggaAGAGCAGgCGC-UUGUC-GA--------AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 56233 0.66 0.998797
Target:  5'- uCCUUCUUGcugCCGCcgcccccGGACccgGGgUUCGCCg -3'
miRNA:   3'- -GGAAGAGCa--GGCG-------CUUG---UCgAAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 141270 0.66 0.998796
Target:  5'- aCCacgUUCGUCCcgacgccggccgcGCGcACGGCggCACCg -3'
miRNA:   3'- -GGaa-GAGCAGG-------------CGCuUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 214444 0.66 0.998751
Target:  5'- cCCgUCUaCGUCgGCGAggacgaggccgucuACuGCUUcCACCg -3'
miRNA:   3'- -GGaAGA-GCAGgCGCU--------------UGuCGAA-GUGG- -5'
8972 3' -51.5 NC_002512.2 + 18673 0.66 0.998751
Target:  5'- ---aCUCGUCggagaggaagagcuCGUGGGCGGCgggCACCc -3'
miRNA:   3'- ggaaGAGCAG--------------GCGCUUGUCGaa-GUGG- -5'
8972 3' -51.5 NC_002512.2 + 87417 0.66 0.998728
Target:  5'- aCCUUCccucuaUCGUCCacgaucauGCGAACAGCacagaacggaaACCg -3'
miRNA:   3'- -GGAAG------AGCAGG--------CGCUUGUCGaag--------UGG- -5'
8972 3' -51.5 NC_002512.2 + 187244 0.66 0.998581
Target:  5'- gCUUCgUCGaacccUCCGCGuuGAUGGCggacgUCGCCu -3'
miRNA:   3'- gGAAG-AGC-----AGGCGC--UUGUCGa----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 112890 0.66 0.998581
Target:  5'- gCgUUCUCGUCggucgccgcguCGCGGAcCAGCUcgaUCAgCa -3'
miRNA:   3'- -GgAAGAGCAG-----------GCGCUU-GUCGA---AGUgG- -5'
8972 3' -51.5 NC_002512.2 + 153862 0.66 0.998581
Target:  5'- ----gUCGUCCGCGucguCGGCgccUCACg -3'
miRNA:   3'- ggaagAGCAGGCGCuu--GUCGa--AGUGg -5'
8972 3' -51.5 NC_002512.2 + 199910 0.66 0.998581
Target:  5'- cCCgugUCugUCGUCCGUucGCGGCcggcCGCCg -3'
miRNA:   3'- -GGa--AG--AGCAGGCGcuUGUCGaa--GUGG- -5'
8972 3' -51.5 NC_002512.2 + 161506 0.66 0.998581
Target:  5'- aCCUggugCGcUgCGCGGACGGCacCGCCg -3'
miRNA:   3'- -GGAaga-GC-AgGCGCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 208302 0.66 0.998581
Target:  5'- gCUUUCcCGUCUGCGAcaugaAGCgccucaUCGCCu -3'
miRNA:   3'- -GGAAGaGCAGGCGCUug---UCGa-----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 91293 0.66 0.998421
Target:  5'- gCCagcgUCUCcccggCCGCGAuccGCAGCguggucugcgacgcgUUCACCa -3'
miRNA:   3'- -GGa---AGAGca---GGCGCU---UGUCG---------------AAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 89774 0.66 0.998421
Target:  5'- -gUUCUCGgacguccggcaguacUCCGacaGGACGGggUCGCCg -3'
miRNA:   3'- ggAAGAGC---------------AGGCg--CUUGUCgaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 124599 0.66 0.998305
Target:  5'- cCCUguccCUCGUCUucgGCGucgGCGGCgucggCGCCu -3'
miRNA:   3'- -GGAa---GAGCAGG---CGCu--UGUCGaa---GUGG- -5'
8972 3' -51.5 NC_002512.2 + 116085 0.66 0.998305
Target:  5'- aCUUcCUCGUCUGUcuGGCGcGCUaccUCACCg -3'
miRNA:   3'- gGAA-GAGCAGGCGc-UUGU-CGA---AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 114167 0.66 0.998305
Target:  5'- --gUCUCGgCCGCcuccGACAGCUUgAUCu -3'
miRNA:   3'- ggaAGAGCaGGCGc---UUGUCGAAgUGG- -5'
8972 3' -51.5 NC_002512.2 + 182639 0.66 0.998305
Target:  5'- aUCUUCUccagCGcCUGCGucuCGGCcUCGCCg -3'
miRNA:   3'- -GGAAGA----GCaGGCGCuu-GUCGaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 105377 0.66 0.998275
Target:  5'- gCCUUgaCGuacagggUCCGgGGACAGCg-CACCu -3'
miRNA:   3'- -GGAAgaGC-------AGGCgCUUGUCGaaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.