miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 3' -62.9 NC_002512.2 + 4877 0.66 0.747924
Target:  5'- uGCGGCGccggcuggaggagcGGCGACGGGaagaGGGCgCCGc-- -3'
miRNA:   3'- -CGUCGCa-------------CCGCUGCCC----CCCG-GGCuuc -5'
8974 3' -62.9 NC_002512.2 + 120213 0.66 0.747924
Target:  5'- aCAGCcuggacguggaacugGUGGCGACGGGccugucguggaGGGCCUa--- -3'
miRNA:   3'- cGUCG---------------CACCGCUGCCC-----------CCCGGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 181585 0.66 0.744343
Target:  5'- uGCGGCGgcaggGGCGGCGGGuccGcgacguccuccuGCUCGggGg -3'
miRNA:   3'- -CGUCGCa----CCGCUGCCCc--C------------CGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 87283 0.66 0.744343
Target:  5'- cGCGGuCGUGGgGugGacGGaGUCCGAGGa -3'
miRNA:   3'- -CGUC-GCACCgCugCccCC-CGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 229564 0.66 0.744343
Target:  5'- gGCGGCaggaGGCGGCaGaGGaGGCCgGAGGg -3'
miRNA:   3'- -CGUCGca--CCGCUGcC-CC-CCGGgCUUC- -5'
8974 3' -62.9 NC_002512.2 + 161 0.66 0.744343
Target:  5'- gGCGGCaggaGGCGGCaGaGGaGGCCgGAGGg -3'
miRNA:   3'- -CGUCGca--CCGCUGcC-CC-CCGGgCUUC- -5'
8974 3' -62.9 NC_002512.2 + 129863 0.66 0.744343
Target:  5'- -aGGCGgaggacGGCGGCGGGGGauucgccgucGCCCu--- -3'
miRNA:   3'- cgUCGCa-----CCGCUGCCCCC----------CGGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 92546 0.66 0.744343
Target:  5'- cGCGGCGgccgcGGCGACGacgucGGaGGCgCCGAc- -3'
miRNA:   3'- -CGUCGCa----CCGCUGCc----CC-CCG-GGCUuc -5'
8974 3' -62.9 NC_002512.2 + 170803 0.66 0.744343
Target:  5'- gGCGGCGagggGaGCGACGGGGGcgGCagCGgcGg -3'
miRNA:   3'- -CGUCGCa---C-CGCUGCCCCC--CGg-GCuuC- -5'
8974 3' -62.9 NC_002512.2 + 45024 0.66 0.744343
Target:  5'- aGCAGCGcacGCuGACGGuGGaCCCGAGGa -3'
miRNA:   3'- -CGUCGCac-CG-CUGCCcCCcGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 223911 0.66 0.741649
Target:  5'- aGCGGCGcgGGCGAgaggucgagccggaCGGGGaGGucgaucCCUGggGa -3'
miRNA:   3'- -CGUCGCa-CCGCU--------------GCCCC-CC------GGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 74644 0.66 0.735334
Target:  5'- aCGGCccgGGgGAgauCGGGGGaGCUCGggGg -3'
miRNA:   3'- cGUCGca-CCgCU---GCCCCC-CGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 97831 0.66 0.735334
Target:  5'- aGUAGag-GGCGGCGcGGGGGaagCGGAGg -3'
miRNA:   3'- -CGUCgcaCCGCUGC-CCCCCgg-GCUUC- -5'
8974 3' -62.9 NC_002512.2 + 108830 0.66 0.735334
Target:  5'- --cGCGccucgGGCGGCGGGuacccGGCCCaGAGGu -3'
miRNA:   3'- cguCGCa----CCGCUGCCCc----CCGGG-CUUC- -5'
8974 3' -62.9 NC_002512.2 + 11719 0.66 0.735334
Target:  5'- cCGGCGUaccgaGGCuACGGGGacgaGGCCgGGAGc -3'
miRNA:   3'- cGUCGCA-----CCGcUGCCCC----CCGGgCUUC- -5'
8974 3' -62.9 NC_002512.2 + 136070 0.66 0.726248
Target:  5'- --uGCGUGGgucCGGcCGGGGGGCCgGc-- -3'
miRNA:   3'- cguCGCACC---GCU-GCCCCCCGGgCuuc -5'
8974 3' -62.9 NC_002512.2 + 160665 0.66 0.726248
Target:  5'- cGCGGCGacGGgGAuuCGGGGGGgacUUCGggGg -3'
miRNA:   3'- -CGUCGCa-CCgCU--GCCCCCC---GGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 111178 0.66 0.726248
Target:  5'- cCGGCGagcGGCaGGCGGGGGaaGCCCa--- -3'
miRNA:   3'- cGUCGCa--CCG-CUGCCCCC--CGGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 112899 0.66 0.724422
Target:  5'- uGCGGcCGUcGGCccgcccgGACGGGGcgucggcGGCCCGGu- -3'
miRNA:   3'- -CGUC-GCA-CCG-------CUGCCCC-------CCGGGCUuc -5'
8974 3' -62.9 NC_002512.2 + 80749 0.66 0.717093
Target:  5'- cGCGGCGgucccgGGUccCGGGGguccucgcGGCUCGAGGa -3'
miRNA:   3'- -CGUCGCa-----CCGcuGCCCC--------CCGGGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.