miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 3' -63.5 NC_002512.2 + 73838 0.65 0.723014
Target:  5'- aGCCU-CgCCGUGucgcgaCCCGCaugcacuGGCCCCAGGa -3'
miRNA:   3'- -CGGAcG-GGUACc-----GGGCG-------CUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 92641 0.66 0.714779
Target:  5'- cGCCgGCgCcgGGaCCCGCGcggaUCCGGGa -3'
miRNA:   3'- -CGGaCGgGuaCC-GGGCGCug--GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 31738 0.66 0.714779
Target:  5'- cGCCgacccgGCCCGcgcggGGCUCGCGcuucgccaACCUCAaGGg -3'
miRNA:   3'- -CGGa-----CGGGUa----CCGGGCGC--------UGGGGU-CC- -5'
8975 3' -63.5 NC_002512.2 + 99386 0.66 0.714779
Target:  5'- cGCCaGCgUCggGGUCCG-GACuCCCGGGg -3'
miRNA:   3'- -CGGaCG-GGuaCCGGGCgCUG-GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 195342 0.66 0.714779
Target:  5'- uGCgUGaCCC--GGCgCCGgGaACCCCGGGu -3'
miRNA:   3'- -CGgAC-GGGuaCCG-GGCgC-UGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 145019 0.66 0.714779
Target:  5'- cGCCcgcuacGCCCG-GGCgCGCaACgCCCGGGa -3'
miRNA:   3'- -CGGa-----CGGGUaCCGgGCGcUG-GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 130006 0.66 0.714779
Target:  5'- cGCgUGCCCGU-GUCCGCG-CUCCGcguGGu -3'
miRNA:   3'- -CGgACGGGUAcCGGGCGCuGGGGU---CC- -5'
8975 3' -63.5 NC_002512.2 + 93262 0.66 0.714779
Target:  5'- cCCUGUCCAaGGCCacgcuggagggCGCGGCCCg--- -3'
miRNA:   3'- cGGACGGGUaCCGG-----------GCGCUGGGgucc -5'
8975 3' -63.5 NC_002512.2 + 186795 0.66 0.714779
Target:  5'- aGCCgucCCCGcuGCUCGCcgcGCCCCGGGa -3'
miRNA:   3'- -CGGac-GGGUacCGGGCGc--UGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 150735 0.66 0.714779
Target:  5'- -aCUuCCCGUcGGCCCGCGcgcGgCCCAGa -3'
miRNA:   3'- cgGAcGGGUA-CCGGGCGC---UgGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 183377 0.66 0.714779
Target:  5'- gGCCUGCUgAUGuuCCGCcucGACaCCGGGa -3'
miRNA:   3'- -CGGACGGgUACcgGGCG---CUGgGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 2650 0.66 0.712022
Target:  5'- uGCCcGCCCGUccgccgcgccucccGGUCCGCcGCCuCCuGGu -3'
miRNA:   3'- -CGGaCGGGUA--------------CCGGGCGcUGG-GGuCC- -5'
8975 3' -63.5 NC_002512.2 + 152817 0.66 0.709261
Target:  5'- cGUCggucCCCGgucgaaaaggaucgGGCCuCGCGGuCCCCAGGc -3'
miRNA:   3'- -CGGac--GGGUa-------------CCGG-GCGCU-GGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 2786 0.66 0.705572
Target:  5'- cGUCUgaGCCCGacccGGCCgGCGGCCggCGGGa -3'
miRNA:   3'- -CGGA--CGGGUa---CCGGgCGCUGGg-GUCC- -5'
8975 3' -63.5 NC_002512.2 + 198366 0.66 0.705572
Target:  5'- cGCCgUGUCCGUGGCcuCCGUGA--UCAGGc -3'
miRNA:   3'- -CGG-ACGGGUACCG--GGCGCUggGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 98847 0.66 0.705572
Target:  5'- cGCC-GUCCucc-CCCGCGGCCCCGa- -3'
miRNA:   3'- -CGGaCGGGuaccGGGCGCUGGGGUcc -5'
8975 3' -63.5 NC_002512.2 + 44402 0.66 0.705572
Target:  5'- gGCgUGCgCCAUGaCCUGCGGCggCAGGa -3'
miRNA:   3'- -CGgACG-GGUACcGGGCGCUGggGUCC- -5'
8975 3' -63.5 NC_002512.2 + 100475 0.66 0.705572
Target:  5'- uUCUcGgUCGUGGCCCG-GACCUUGGGg -3'
miRNA:   3'- cGGA-CgGGUACCGGGCgCUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 130903 0.66 0.705572
Target:  5'- gGCCgGCCauCGUGGCUCGCacucuggaGuCCCCGGa -3'
miRNA:   3'- -CGGaCGG--GUACCGGGCG--------CuGGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 154953 0.66 0.705572
Target:  5'- cGCuCU-CCCGcGGUCCGCGAuccgcCUCCGGGc -3'
miRNA:   3'- -CG-GAcGGGUaCCGGGCGCU-----GGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.