miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 102282 0.66 0.975843
Target:  5'- cGGCUCGGcgCGCGUCGACCGCcagGGCg- -3'
miRNA:   3'- -CUGGGCUcaGCGUAGUUGGCG---UUGgu -5'
8977 5' -54.9 NC_002512.2 + 149242 0.66 0.975843
Target:  5'- gGACCCG-G-CGCcgCcGCCGCGgacgGCCGg -3'
miRNA:   3'- -CUGGGCuCaGCGuaGuUGGCGU----UGGU- -5'
8977 5' -54.9 NC_002512.2 + 206568 0.66 0.975843
Target:  5'- cGGCCCGGGgCGCcagAACUGCAgguGCCGu -3'
miRNA:   3'- -CUGGGCUCaGCGuagUUGGCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 192812 0.66 0.975843
Target:  5'- cACCCGGGgCG-AUCGcACCGgGGCCAg -3'
miRNA:   3'- cUGGGCUCaGCgUAGU-UGGCgUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 95211 0.66 0.975843
Target:  5'- cGCCCGcuggugacGGaUCGCGUCGGCCccGCAcucgGCCAc -3'
miRNA:   3'- cUGGGC--------UC-AGCGUAGUUGG--CGU----UGGU- -5'
8977 5' -54.9 NC_002512.2 + 124185 0.66 0.975843
Target:  5'- -cCCCGAG-CGCGgcguUCGGCaCGCAcaucACCAc -3'
miRNA:   3'- cuGGGCUCaGCGU----AGUUG-GCGU----UGGU- -5'
8977 5' -54.9 NC_002512.2 + 60708 0.66 0.975843
Target:  5'- gGACCCGcacuucacGGUCaacaaGUAUguaUAACCGCGACCGc -3'
miRNA:   3'- -CUGGGC--------UCAG-----CGUA---GUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 28588 0.66 0.975843
Target:  5'- uGAUCCGAGcggugCGCGUCAucuCgGUGGCCu -3'
miRNA:   3'- -CUGGGCUCa----GCGUAGUu--GgCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 6997 0.66 0.975843
Target:  5'- aGCCCucgaAGUCGCAggagAGCCGCAggGCCu -3'
miRNA:   3'- cUGGGc---UCAGCGUag--UUGGCGU--UGGu -5'
8977 5' -54.9 NC_002512.2 + 121145 0.66 0.975843
Target:  5'- cGGCggCCGAGaCGC--CGGCCGCGGCCc -3'
miRNA:   3'- -CUG--GGCUCaGCGuaGUUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 178689 0.66 0.975843
Target:  5'- -gUCCGAGgccCGCAgcgCGGCCGCcgcguugcuGGCCAg -3'
miRNA:   3'- cuGGGCUCa--GCGUa--GUUGGCG---------UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 77423 0.66 0.975843
Target:  5'- gGACCCGGGaCGCcUCccaacGCCGCGcGCCc -3'
miRNA:   3'- -CUGGGCUCaGCGuAGu----UGGCGU-UGGu -5'
8977 5' -54.9 NC_002512.2 + 170049 0.66 0.975843
Target:  5'- uGGCCauGGcCGCcgCcGCCGCGGCCGc -3'
miRNA:   3'- -CUGGgcUCaGCGuaGuUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 14768 0.66 0.975596
Target:  5'- gGACCCcGGcCGUucuggcgGUCGGCCGCGGCg- -3'
miRNA:   3'- -CUGGGcUCaGCG-------UAGUUGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 59302 0.66 0.974335
Target:  5'- gGACUCGGGUCGgGaCAcggcgacggaggagaACUGCGACCu -3'
miRNA:   3'- -CUGGGCUCAGCgUaGU---------------UGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 188370 0.66 0.973291
Target:  5'- aGACCCGAGUUGCcgCAcgggagAUgGCGgggaGCCu -3'
miRNA:   3'- -CUGGGCUCAGCGuaGU------UGgCGU----UGGu -5'
8977 5' -54.9 NC_002512.2 + 2007 0.66 0.973291
Target:  5'- cGCCCGcGUCGCcUgAGCCGgcACCAg -3'
miRNA:   3'- cUGGGCuCAGCGuAgUUGGCguUGGU- -5'
8977 5' -54.9 NC_002512.2 + 201829 0.66 0.973291
Target:  5'- cGCCCGGGg-GC-UCcuuCCGCGGCCGg -3'
miRNA:   3'- cUGGGCUCagCGuAGuu-GGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 141602 0.66 0.973291
Target:  5'- cAUCCGAGcCGCGUCccgacacgccuGCCGCcACCu -3'
miRNA:   3'- cUGGGCUCaGCGUAGu----------UGGCGuUGGu -5'
8977 5' -54.9 NC_002512.2 + 111274 0.66 0.973291
Target:  5'- aGCuuGAuGUCGaCGUC--CCGCGGCCAg -3'
miRNA:   3'- cUGggCU-CAGC-GUAGuuGGCGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.