miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 3' -55.9 NC_002512.2 + 11674 0.66 0.963748
Target:  5'- gGCCCGC--CG-CGGCCcGAggcgGGGGCCc -3'
miRNA:   3'- gUGGGCGuaGCaGUCGGuCU----UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 166195 0.66 0.963748
Target:  5'- -cCCCGUGgccuucUUGggCGGCgAGGAGGGCCg -3'
miRNA:   3'- guGGGCGU------AGCa-GUCGgUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 98258 0.66 0.963748
Target:  5'- aACuCCGagagCGUCuucguGGCCGGgcGGGCCg -3'
miRNA:   3'- gUG-GGCgua-GCAG-----UCGGUCuuCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 19939 0.66 0.963748
Target:  5'- gACCCGCgcccgGUCGagCAGCC-GAAGA-CCu -3'
miRNA:   3'- gUGGGCG-----UAGCa-GUCGGuCUUCUcGG- -5'
8979 3' -55.9 NC_002512.2 + 1 0.66 0.963748
Target:  5'- gCACCCGUcgUGagGGCCGGuccuccucccccGGGGGCg -3'
miRNA:   3'- -GUGGGCGuaGCagUCGGUC------------UUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 229405 0.66 0.963748
Target:  5'- gCACCCGUcgUGagGGCCGGuccuccucccccGGGGGCg -3'
miRNA:   3'- -GUGGGCGuaGCagUCGGUC------------UUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 4095 0.66 0.963748
Target:  5'- cCGCCCGCGgcc-CGGCCGGcgcAGCCu -3'
miRNA:   3'- -GUGGGCGUagcaGUCGGUCuucUCGG- -5'
8979 3' -55.9 NC_002512.2 + 197325 0.66 0.963748
Target:  5'- gCACCCGCggCGcccggCGGCUggAGAAGAuCCc -3'
miRNA:   3'- -GUGGGCGuaGCa----GUCGG--UCUUCUcGG- -5'
8979 3' -55.9 NC_002512.2 + 174343 0.66 0.963748
Target:  5'- cCGCCgCGCccUCGUCcGCCGGGaugcGGAugGCCg -3'
miRNA:   3'- -GUGG-GCGu-AGCAGuCGGUCU----UCU--CGG- -5'
8979 3' -55.9 NC_002512.2 + 112889 0.66 0.963748
Target:  5'- cCGCCCuGCGUgcggcCGUCGGCCcgcccGGAcGGGGCg -3'
miRNA:   3'- -GUGGG-CGUA-----GCAGUCGG-----UCU-UCUCGg -5'
8979 3' -55.9 NC_002512.2 + 135833 0.66 0.963748
Target:  5'- cCGCCgCGCccGUCGUC-GCC-GAAGAgauccGCCg -3'
miRNA:   3'- -GUGG-GCG--UAGCAGuCGGuCUUCU-----CGG- -5'
8979 3' -55.9 NC_002512.2 + 155671 0.66 0.963748
Target:  5'- -cCCCGCGUCGggaccgCGGCCcacGGAcGucGCCg -3'
miRNA:   3'- guGGGCGUAGCa-----GUCGG---UCUuCu-CGG- -5'
8979 3' -55.9 NC_002512.2 + 4740 0.66 0.963748
Target:  5'- gGCauGCGUCGUCGacGgCGGAAGAGgCg -3'
miRNA:   3'- gUGggCGUAGCAGU--CgGUCUUCUCgG- -5'
8979 3' -55.9 NC_002512.2 + 88984 0.66 0.963748
Target:  5'- -uCCgGCuUCGU-GGCCGGggG-GCCg -3'
miRNA:   3'- guGGgCGuAGCAgUCGGUCuuCuCGG- -5'
8979 3' -55.9 NC_002512.2 + 71575 0.66 0.963748
Target:  5'- gACUCGCGcCGgacgaccgCGGCCuuGGGGGCCg -3'
miRNA:   3'- gUGGGCGUaGCa-------GUCGGucUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 121094 0.66 0.96276
Target:  5'- gCGCCCGCAgcggcccguagaguUCGgugacgacCAGCCGGAuc-GCCc -3'
miRNA:   3'- -GUGGGCGU--------------AGCa-------GUCGGUCUucuCGG- -5'
8979 3' -55.9 NC_002512.2 + 4668 0.66 0.960383
Target:  5'- cCGCCgGCG-CGUCgaAGCCcAGGAGGGaCUg -3'
miRNA:   3'- -GUGGgCGUaGCAG--UCGG-UCUUCUC-GG- -5'
8979 3' -55.9 NC_002512.2 + 185212 0.66 0.960383
Target:  5'- -uUCCGCGUCGUCcacGUCAcGGGGGCg -3'
miRNA:   3'- guGGGCGUAGCAGu--CGGUcUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 33725 0.66 0.960383
Target:  5'- gGCUCGCcccUCGUCGaCCGGAgcgaGGAGCg -3'
miRNA:   3'- gUGGGCGu--AGCAGUcGGUCU----UCUCGg -5'
8979 3' -55.9 NC_002512.2 + 118671 0.66 0.960383
Target:  5'- cCGCCCGuCAUCGUCuGuCCcGAcgucGGcGCCg -3'
miRNA:   3'- -GUGGGC-GUAGCAGuC-GGuCU----UCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.