miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 5' -68.2 NC_002512.2 + 171827 0.66 0.517822
Target:  5'- cCCGGCAUccgguaCCGCGGgacgGUCCGGCcGCg- -3'
miRNA:   3'- -GGCCGUG------GGCGCCg---CGGGCCGcCGac -5'
8979 5' -68.2 NC_002512.2 + 133160 0.66 0.517822
Target:  5'- uCCGGUuCCCGCGGgccgGCCC-GCGGg-- -3'
miRNA:   3'- -GGCCGuGGGCGCCg---CGGGcCGCCgac -5'
8979 5' -68.2 NC_002512.2 + 83936 0.66 0.517822
Target:  5'- cCCGGCGCauguCGCGcaGCaggucgaagaaGuCCCGGCGGCg- -3'
miRNA:   3'- -GGCCGUGg---GCGC--CG-----------C-GGGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 9219 0.66 0.517822
Target:  5'- cCCaGCACgaCGCGGCggGCCaGGUGGCg- -3'
miRNA:   3'- -GGcCGUGg-GCGCCG--CGGgCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 120255 0.66 0.517822
Target:  5'- -gGGCcuACCCGCGG-GaCCGcCGGCUGa -3'
miRNA:   3'- ggCCG--UGGGCGCCgCgGGCcGCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 31660 0.66 0.517822
Target:  5'- aCGGCGCgggCGCGGC-CgUGGUGGCg- -3'
miRNA:   3'- gGCCGUGg--GCGCCGcGgGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 119099 0.66 0.517822
Target:  5'- gCGGCggACCUGgugGGCGUcguguaCCGGCGGCg- -3'
miRNA:   3'- gGCCG--UGGGCg--CCGCG------GGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 164440 0.66 0.517822
Target:  5'- gCCGGgAagCCGCucGGCGCCCucGGCGGg-- -3'
miRNA:   3'- -GGCCgUg-GGCG--CCGCGGG--CCGCCgac -5'
8979 5' -68.2 NC_002512.2 + 166014 0.66 0.517822
Target:  5'- aCGGC-UCCGgGGaCGCguUCGGCGGCc- -3'
miRNA:   3'- gGCCGuGGGCgCC-GCG--GGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 111144 0.66 0.517822
Target:  5'- aUGGCguucagccccACCUGCGcGCuGCCgaucagguggUGGCGGCUGg -3'
miRNA:   3'- gGCCG----------UGGGCGC-CG-CGG----------GCCGCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 67964 0.66 0.517822
Target:  5'- gCCGGUuCgCCGUGGCGUCCgccggaggagGGcCGGCg- -3'
miRNA:   3'- -GGCCGuG-GGCGCCGCGGG----------CC-GCCGac -5'
8979 5' -68.2 NC_002512.2 + 213686 0.66 0.517822
Target:  5'- cCCGGCgucGCCCGCGGUcCUCGaacUGGCUu -3'
miRNA:   3'- -GGCCG---UGGGCGCCGcGGGCc--GCCGAc -5'
8979 5' -68.2 NC_002512.2 + 121328 0.66 0.517822
Target:  5'- aCaGCACCgGuCGGaagGCCCGGCGGa-- -3'
miRNA:   3'- gGcCGUGGgC-GCCg--CGGGCCGCCgac -5'
8979 5' -68.2 NC_002512.2 + 154729 0.66 0.509117
Target:  5'- aCGGCGuugcgUCCGCGGCcgcGUCCGaCGGCg- -3'
miRNA:   3'- gGCCGU-----GGGCGCCG---CGGGCcGCCGac -5'
8979 5' -68.2 NC_002512.2 + 5360 0.66 0.509117
Target:  5'- cCCGGgACCUGUGGUcCuCCGGCucuGGCg- -3'
miRNA:   3'- -GGCCgUGGGCGCCGcG-GGCCG---CCGac -5'
8979 5' -68.2 NC_002512.2 + 60741 0.66 0.509117
Target:  5'- aCC-GCGaCCGCGGCgGCCgGGCGGaCg- -3'
miRNA:   3'- -GGcCGUgGGCGCCG-CGGgCCGCC-Gac -5'
8979 5' -68.2 NC_002512.2 + 204712 0.66 0.509117
Target:  5'- gUCGGCGaCgGCGG-GCCCGG-GGCg- -3'
miRNA:   3'- -GGCCGUgGgCGCCgCGGGCCgCCGac -5'
8979 5' -68.2 NC_002512.2 + 34693 0.66 0.509117
Target:  5'- aCCGGCACCCagGCGucguaucauCGCCCGucuCGGcCUGg -3'
miRNA:   3'- -GGCCGUGGG--CGCc--------GCGGGCc--GCC-GAC- -5'
8979 5' -68.2 NC_002512.2 + 212155 0.66 0.509117
Target:  5'- gCgGGCACUgGCGGCG---GGaCGGCUGg -3'
miRNA:   3'- -GgCCGUGGgCGCCGCgggCC-GCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 123775 0.66 0.509117
Target:  5'- cCCGGUguuccGCCCG-GGCGagUCGaaGCGGCUGa -3'
miRNA:   3'- -GGCCG-----UGGGCgCCGCg-GGC--CGCCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.