miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 3' -58 NC_002512.2 + 29950 0.66 0.92497
Target:  5'- -cUGGACaGCCGgugagCgGCGGCCgGCCgCGa -3'
miRNA:   3'- cuACCUG-CGGCa----GaUGCUGGaCGG-GC- -5'
8980 3' -58 NC_002512.2 + 132102 0.66 0.92497
Target:  5'- --cGGAucuCGuCCGUCU-CGGCCggcagcGCCCGg -3'
miRNA:   3'- cuaCCU---GC-GGCAGAuGCUGGa-----CGGGC- -5'
8980 3' -58 NC_002512.2 + 99333 0.66 0.92497
Target:  5'- -cUGuACGUCGUCUcggACcGCCUGUCCGg -3'
miRNA:   3'- cuACcUGCGGCAGA---UGcUGGACGGGC- -5'
8980 3' -58 NC_002512.2 + 99721 0.66 0.92497
Target:  5'- ----cGCGCCGUCgcgGGCCgGCCCGc -3'
miRNA:   3'- cuaccUGCGGCAGaugCUGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 115728 0.66 0.92497
Target:  5'- --cGGAgGCgGcCgagACGACgCUGCCCa -3'
miRNA:   3'- cuaCCUgCGgCaGa--UGCUG-GACGGGc -5'
8980 3' -58 NC_002512.2 + 118615 0.66 0.92497
Target:  5'- cGcgGGACGUcgacaucaagcuCGUCcGCGugCcGCCCGa -3'
miRNA:   3'- -CuaCCUGCG------------GCAGaUGCugGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 129670 0.66 0.92497
Target:  5'- ---cGACGCCGcCUcgACGGCgUaGCCCGa -3'
miRNA:   3'- cuacCUGCGGCaGA--UGCUGgA-CGGGC- -5'
8980 3' -58 NC_002512.2 + 67661 0.66 0.92497
Target:  5'- --cGGACGCgGgCU-CGACCgucgaguggUGCCCGu -3'
miRNA:   3'- cuaCCUGCGgCaGAuGCUGG---------ACGGGC- -5'
8980 3' -58 NC_002512.2 + 209755 0.66 0.92341
Target:  5'- --cGGACaGCCGUCgcgcuccgcgucuuuCGGCaaGCCCGg -3'
miRNA:   3'- cuaCCUG-CGGCAGau-------------GCUGgaCGGGC- -5'
8980 3' -58 NC_002512.2 + 213030 0.66 0.92341
Target:  5'- aGGUGcGucCGCCGgCUGCGGgggaucgagaucgcCCUGCCCa -3'
miRNA:   3'- -CUAC-Cu-GCGGCaGAUGCU--------------GGACGGGc -5'
8980 3' -58 NC_002512.2 + 201630 0.66 0.921831
Target:  5'- cGGUaGGCGCCGUCguacucgcggcgcgACGGCCccgGCCgCGg -3'
miRNA:   3'- -CUAcCUGCGGCAGa-------------UGCUGGa--CGG-GC- -5'
8980 3' -58 NC_002512.2 + 29170 0.66 0.919696
Target:  5'- --cGGAcCGCCGg--GCGGCa-GCCCGa -3'
miRNA:   3'- cuaCCU-GCGGCagaUGCUGgaCGGGC- -5'
8980 3' -58 NC_002512.2 + 101589 0.66 0.919696
Target:  5'- --aGGGucccCGCgGUCgugcggGCGGCCgucgGCCCGg -3'
miRNA:   3'- cuaCCU----GCGgCAGa-----UGCUGGa---CGGGC- -5'
8980 3' -58 NC_002512.2 + 200496 0.66 0.919696
Target:  5'- --aGGGCGgCGUCcucCGACCgggGCUCGu -3'
miRNA:   3'- cuaCCUGCgGCAGau-GCUGGa--CGGGC- -5'
8980 3' -58 NC_002512.2 + 141145 0.66 0.919696
Target:  5'- --aGGACGCCGugcagaUCUacACGACCUuCCgCGa -3'
miRNA:   3'- cuaCCUGCGGC------AGA--UGCUGGAcGG-GC- -5'
8980 3' -58 NC_002512.2 + 219283 0.66 0.919696
Target:  5'- --cGGACGCCG---ACG-CCgugGCCCGc -3'
miRNA:   3'- cuaCCUGCGGCagaUGCuGGa--CGGGC- -5'
8980 3' -58 NC_002512.2 + 16661 0.66 0.919696
Target:  5'- ---cGGCGCCGUUgGCGGCCacGaCCCGg -3'
miRNA:   3'- cuacCUGCGGCAGaUGCUGGa-C-GGGC- -5'
8980 3' -58 NC_002512.2 + 226434 0.66 0.919156
Target:  5'- cGcgGGAccuucguCGCCGUCacCGACCaGCCCc -3'
miRNA:   3'- -CuaCCU-------GCGGCAGauGCUGGaCGGGc -5'
8980 3' -58 NC_002512.2 + 123110 0.66 0.914204
Target:  5'- --cGGAaccgucccgcCGCCGUCgGCGGCC-GuCCCGg -3'
miRNA:   3'- cuaCCU----------GCGGCAGaUGCUGGaC-GGGC- -5'
8980 3' -58 NC_002512.2 + 107873 0.66 0.914204
Target:  5'- cGUGGAgGCCGUCgucaccuUGGCC-GCCgCGa -3'
miRNA:   3'- cUACCUgCGGCAGau-----GCUGGaCGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.