miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 81777 0.66 0.610177
Target:  5'- aCUCgGCCGgcucagaUCGCgacucuagccacgagGGCCGacgCGCCGCGa -3'
miRNA:   3'- gGAGgCGGC-------GGCG---------------CCGGCa--GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 219750 0.66 0.607441
Target:  5'- aCCUCUucugcugagGCCGaacauauuugcCCGCGGCCGgcccgGCCGgGg -3'
miRNA:   3'- -GGAGG---------CGGC-----------GGCGCCGGCag---CGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 108793 0.66 0.607441
Target:  5'- aCUCUacggGCCGCUGCGggcGCUGUU-CCGCGa -3'
miRNA:   3'- gGAGG----CGGCGGCGC---CGGCAGcGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 118183 0.66 0.607441
Target:  5'- aCUCCGUCGucauCCGCgaccccgaGGCCGUCuGgUGCGa -3'
miRNA:   3'- gGAGGCGGC----GGCG--------CCGGCAG-CgGCGC- -5'
8981 5' -66.7 NC_002512.2 + 188356 0.66 0.607441
Target:  5'- aCUUCCG-CGUCGCGaGaCCcgaGUUGCCGCa -3'
miRNA:   3'- -GGAGGCgGCGGCGC-C-GG---CAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 71898 0.66 0.607441
Target:  5'- uCCUCCcgGUCGCCGauGUCGaCGCUGuCGg -3'
miRNA:   3'- -GGAGG--CGGCGGCgcCGGCaGCGGC-GC- -5'
8981 5' -66.7 NC_002512.2 + 174659 0.66 0.607441
Target:  5'- uUCUCCagguGCCGCaCGaucagccgguacCGGCCGUUcagcagguugGCCGCGu -3'
miRNA:   3'- -GGAGG----CGGCG-GC------------GCCGGCAG----------CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 119700 0.66 0.607441
Target:  5'- cCCUgCGCgCGagaaGCGGCCGgccgGCCGUGc -3'
miRNA:   3'- -GGAgGCG-GCgg--CGCCGGCag--CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 137297 0.66 0.607441
Target:  5'- gCCUcgggaCCGCCGCCccuccCGGCCG-CGgCGuCGg -3'
miRNA:   3'- -GGA-----GGCGGCGGc----GCCGGCaGCgGC-GC- -5'
8981 5' -66.7 NC_002512.2 + 150528 0.66 0.607441
Target:  5'- gUUCCa-CGCgGCGGCCGcgaggguacgcCGCCGCGa -3'
miRNA:   3'- gGAGGcgGCGgCGCCGGCa----------GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 122259 0.66 0.604707
Target:  5'- uCUUCCccgGCgGCCGCGGggacguccuggagcCCGUCagcgaGCCGCa -3'
miRNA:   3'- -GGAGG---CGgCGGCGCC--------------GGCAG-----CGGCGc -5'
8981 5' -66.7 NC_002512.2 + 33055 0.66 0.601064
Target:  5'- uCCaUCCGCCGCagcccguCGCagaagaaggacuggaGGCUGUCGCCcaGCu -3'
miRNA:   3'- -GG-AGGCGGCG-------GCG---------------CCGGCAGCGG--CGc -5'
8981 5' -66.7 NC_002512.2 + 108484 0.66 0.599243
Target:  5'- cCCUCCacgccaggcgcggcuCCGUC-CGGCCGUCGCCc-- -3'
miRNA:   3'- -GGAGGc--------------GGCGGcGCCGGCAGCGGcgc -5'
8981 5' -66.7 NC_002512.2 + 134255 0.66 0.598333
Target:  5'- gCCgagCCGCC-CCcUGGCCuucGUCGuCCGCGc -3'
miRNA:   3'- -GGa--GGCGGcGGcGCCGG---CAGC-GGCGC- -5'
8981 5' -66.7 NC_002512.2 + 96137 0.66 0.598333
Target:  5'- --gUCGUCGUCGCGGgcgcucuccUCGUCGUCGCu -3'
miRNA:   3'- ggaGGCGGCGGCGCC---------GGCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 55483 0.66 0.598333
Target:  5'- gCC-CCGgCGCCGCGGgaaCG-CGCCaCGg -3'
miRNA:   3'- -GGaGGCgGCGGCGCCg--GCaGCGGcGC- -5'
8981 5' -66.7 NC_002512.2 + 140252 0.66 0.598333
Target:  5'- uCgUCCGCC-CCGuCGGCU-UCGuCCGCa -3'
miRNA:   3'- -GgAGGCGGcGGC-GCCGGcAGC-GGCGc -5'
8981 5' -66.7 NC_002512.2 + 200776 0.66 0.598333
Target:  5'- --gUCGCCaucGCCaUGGCCGcCGCCGCc -3'
miRNA:   3'- ggaGGCGG---CGGcGCCGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 30237 0.66 0.598333
Target:  5'- cCCUCCuCCGuCCGCGGgaaacggGUCcCCGCGg -3'
miRNA:   3'- -GGAGGcGGC-GGCGCCgg-----CAGcGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 126764 0.66 0.598333
Target:  5'- gCCUCggggCGCgGCgGCGGCgGcgacgcgUGCCGCGc -3'
miRNA:   3'- -GGAG----GCGgCGgCGCCGgCa------GCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.