miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 98553 0.66 0.966051
Target:  5'- cCCGGcguUCCGCGgaucCGGCgggcgccucgggcggCGGGUCGUCc -3'
miRNA:   3'- uGGCCu--AGGCGUa---GUUG---------------GCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 138323 0.66 0.964791
Target:  5'- -gCGGAUCCGCGagagcggcguggUCAgcGCCaGGUgGUCc -3'
miRNA:   3'- ugGCCUAGGCGU------------AGU--UGGcCCAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 136168 0.66 0.964791
Target:  5'- cCCGucGAUCCGCcgCGcggcggggucGCCGGGaucgCGUCg -3'
miRNA:   3'- uGGC--CUAGGCGuaGU----------UGGCCCa---GUAG- -5'
8982 5' -55.8 NC_002512.2 + 77920 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 25140 0.66 0.964791
Target:  5'- gGCCGGGaUCGCugagCAcCCGGGUCc-- -3'
miRNA:   3'- -UGGCCUaGGCGua--GUuGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 110452 0.66 0.964791
Target:  5'- uGCCGGAUCauCAcCAGCaGGGcCGUCa -3'
miRNA:   3'- -UGGCCUAGgcGUaGUUGgCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 134088 0.66 0.964791
Target:  5'- uAUCGGAUCCGCGUCc-CCGGcGcCu-- -3'
miRNA:   3'- -UGGCCUAGGCGUAGuuGGCC-CaGuag -5'
8982 5' -55.8 NC_002512.2 + 77998 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 170033 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 42242 0.66 0.964791
Target:  5'- uGCCGGAuauuaccgaUCCGCGgaCGGCCGaaagagggcgauGGUUAUCc -3'
miRNA:   3'- -UGGCCU---------AGGCGUa-GUUGGC------------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 78076 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 91182 0.66 0.961496
Target:  5'- uGCgGGAUCCGgGUCAGggagaccgccacCCGGGgcaCGUUc -3'
miRNA:   3'- -UGgCCUAGGCgUAGUU------------GGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 60740 0.66 0.961496
Target:  5'- aACCGcGA-CCGCggCGGCCGGG-CGg- -3'
miRNA:   3'- -UGGC-CUaGGCGuaGUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 209435 0.66 0.961496
Target:  5'- cGCgCGGAUgaCCGuCAUCGGCCGGcUgAUCu -3'
miRNA:   3'- -UG-GCCUA--GGC-GUAGUUGGCCcAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 175708 0.66 0.961496
Target:  5'- aGCUGGAUCCGgAUCccgcguCC-GGUCAUg -3'
miRNA:   3'- -UGGCCUAGGCgUAGuu----GGcCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 124097 0.66 0.961496
Target:  5'- -aCGGAcgCCGCGcCuuuCCGGGUCAc- -3'
miRNA:   3'- ugGCCUa-GGCGUaGuu-GGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 184753 0.66 0.961496
Target:  5'- --aGGAUCgGCGggCGGcCCGuGGUCGUCg -3'
miRNA:   3'- uggCCUAGgCGUa-GUU-GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 156417 0.66 0.961496
Target:  5'- cCCGGAUCgGCAUgcuguccgCGGCCGGGc---- -3'
miRNA:   3'- uGGCCUAGgCGUA--------GUUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 184210 0.66 0.960468
Target:  5'- cCCGGA-CCGCggguucucucugggGUCGACCgucGGGUCGg- -3'
miRNA:   3'- uGGCCUaGGCG--------------UAGUUGG---CCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 36381 0.66 0.957995
Target:  5'- cACCGuGAcgUUgGCG-CGACCGaGGUCGUCc -3'
miRNA:   3'- -UGGC-CU--AGgCGUaGUUGGC-CCAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.