miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 226737 0.65 0.720211
Target:  5'- gACGAcGGCgggaccgggcuccgGCCGGACGaCGCGGagGGCg -3'
miRNA:   3'- aUGCU-CCG--------------CGGCCUGUcGCGCCg-CUG- -5'
8984 5' -62.9 NC_002512.2 + 133989 0.65 0.719283
Target:  5'- aGCuGAGGaCGauccaccacaucccCCGGACGaagaucuGCGCGGUGGCg -3'
miRNA:   3'- aUG-CUCC-GC--------------GGCCUGU-------CGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 34924 0.66 0.7137
Target:  5'- gACGAGaCGaCGG-CGGgguCGCGGCGACg -3'
miRNA:   3'- aUGCUCcGCgGCCuGUC---GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 198018 0.66 0.7137
Target:  5'- gACgGGGGCGagGGAC-GCGCGcGCGAg -3'
miRNA:   3'- aUG-CUCCGCggCCUGuCGCGC-CGCUg -5'
8984 5' -62.9 NC_002512.2 + 75431 0.66 0.7137
Target:  5'- gGCGGGaCGuCCGGAuCGGgGCGG-GACg -3'
miRNA:   3'- aUGCUCcGC-GGCCU-GUCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 101776 0.66 0.7137
Target:  5'- gGCGAgacGGCGCCGucCu-CGCGGCGGa -3'
miRNA:   3'- aUGCU---CCGCGGCcuGucGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 220304 0.66 0.7137
Target:  5'- -cCGAGcCGCCGGGgGGC-CGGgGGCc -3'
miRNA:   3'- auGCUCcGCGGCCUgUCGcGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 165397 0.66 0.7137
Target:  5'- -uCGGGGCGCUcaugguccaGGAgGGC-CGGCGGg -3'
miRNA:   3'- auGCUCCGCGG---------CCUgUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 208888 0.66 0.7137
Target:  5'- cGgGAGGgGCCGGGaauccccGCGCGGgaGGCu -3'
miRNA:   3'- aUgCUCCgCGGCCUgu-----CGCGCCg-CUG- -5'
8984 5' -62.9 NC_002512.2 + 71013 0.66 0.7137
Target:  5'- gACGGGGgGCCGccgcCGGC-CGGuCGACg -3'
miRNA:   3'- aUGCUCCgCGGCcu--GUCGcGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 149418 0.66 0.712767
Target:  5'- cGCGAGGgGaCCGcGGCgggggcgGGCGCGGgGGg -3'
miRNA:   3'- aUGCUCCgC-GGC-CUG-------UCGCGCCgCUg -5'
8984 5' -62.9 NC_002512.2 + 103670 0.66 0.712767
Target:  5'- cACGA-GCGCCucgacgucgcagaGGGCGGCggacGCGGCGGg -3'
miRNA:   3'- aUGCUcCGCGG-------------CCUGUCG----CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 217556 0.66 0.7109
Target:  5'- --aGAGacCGCUGGAagugguucugaaacUAGCGCGGUGACu -3'
miRNA:   3'- augCUCc-GCGGCCU--------------GUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 219026 0.66 0.708095
Target:  5'- cUGCGAcGUGCUGGucuacgucgucggccGCGGCGCGG-GGCu -3'
miRNA:   3'- -AUGCUcCGCGGCC---------------UGUCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 85563 0.66 0.704348
Target:  5'- gAgGAGGCGCgGGA--GCGgGaGCGGCc -3'
miRNA:   3'- aUgCUCCGCGgCCUguCGCgC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128777 0.66 0.704348
Target:  5'- gACGAGGCGCUgcucacccucuGGGucucCGGCGUGGUccgcgGGCg -3'
miRNA:   3'- aUGCUCCGCGG-----------CCU----GUCGCGCCG-----CUG- -5'
8984 5' -62.9 NC_002512.2 + 8790 0.66 0.704348
Target:  5'- gAgGAGGCGCCGGAgGGCGUc----- -3'
miRNA:   3'- aUgCUCCGCGGCCUgUCGCGccgcug -5'
8984 5' -62.9 NC_002512.2 + 139013 0.66 0.704348
Target:  5'- aACaGGGgGuCCGacGGCGGCGCGGaCGGCu -3'
miRNA:   3'- aUGcUCCgC-GGC--CUGUCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 11455 0.66 0.704348
Target:  5'- gACGGGG-GCCGGGgaaGGgGCGGaGACc -3'
miRNA:   3'- aUGCUCCgCGGCCUg--UCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 89670 0.66 0.704348
Target:  5'- gACGcGGUGCgaaGGCGGCGgGGCGAg -3'
miRNA:   3'- aUGCuCCGCGgc-CUGUCGCgCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.