miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 131117 0.66 0.932443
Target:  5'- --aGCugC-CCC-CCGACGGcCAGGa -3'
miRNA:   3'- guaCGugGuGGGcGGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 184368 0.66 0.932443
Target:  5'- --cGcCGCCGCCCGCCG-CGGg----- -3'
miRNA:   3'- guaC-GUGGUGGGCGGCuGCCaguuca -5'
8992 5' -57.4 NC_002512.2 + 4650 0.66 0.932443
Target:  5'- --aGCACgGgagcggaggcCCCGCCGGCGcGUCGAa- -3'
miRNA:   3'- guaCGUGgU----------GGGCGGCUGC-CAGUUca -5'
8992 5' -57.4 NC_002512.2 + 115547 0.66 0.932443
Target:  5'- --aGUuaagUCGCCCGCCGcGCGcGUCAAGa -3'
miRNA:   3'- guaCGu---GGUGGGCGGC-UGC-CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 219210 0.66 0.932443
Target:  5'- -cUGCACUGCCgGgCCGGCcucggcgaGGUCGGGa -3'
miRNA:   3'- guACGUGGUGGgC-GGCUG--------CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 184095 0.66 0.932443
Target:  5'- --aGCACgGCCC-CCGGCGGgugCAGu- -3'
miRNA:   3'- guaCGUGgUGGGcGGCUGCCa--GUUca -5'
8992 5' -57.4 NC_002512.2 + 220420 0.66 0.927442
Target:  5'- --gGC-CCGCCCGCCuACGGcCAGc- -3'
miRNA:   3'- guaCGuGGUGGGCGGcUGCCaGUUca -5'
8992 5' -57.4 NC_002512.2 + 145352 0.66 0.927442
Target:  5'- --cGCGCCGCCCGaCGcCGGcuaCGAGg -3'
miRNA:   3'- guaCGUGGUGGGCgGCuGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 73283 0.66 0.927442
Target:  5'- --aGCGCCuCCuCGUacaUGGCGGUCAGGc -3'
miRNA:   3'- guaCGUGGuGG-GCG---GCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 27770 0.66 0.927442
Target:  5'- aCcgGCGCCACCaGCUGacgaggacGCGGUCGGa- -3'
miRNA:   3'- -GuaCGUGGUGGgCGGC--------UGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 123158 0.66 0.927442
Target:  5'- --gGCGCCGCgaucgCCGCCGA-GGcCGAGg -3'
miRNA:   3'- guaCGUGGUG-----GGCGGCUgCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 99898 0.66 0.922217
Target:  5'- --gGCGCgGCCCGUCGAgGGcgcCGGGg -3'
miRNA:   3'- guaCGUGgUGGGCGGCUgCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 79954 0.66 0.922217
Target:  5'- --gGguCCGCCUGCCGucggaaGCGGUCGGc- -3'
miRNA:   3'- guaCguGGUGGGCGGC------UGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 45492 0.66 0.922217
Target:  5'- --aGCGCCcCCCGgCGGCGGcCAc-- -3'
miRNA:   3'- guaCGUGGuGGGCgGCUGCCaGUuca -5'
8992 5' -57.4 NC_002512.2 + 33134 0.66 0.922217
Target:  5'- --aGCAgUACaCGCCGcCGGUCGAGc -3'
miRNA:   3'- guaCGUgGUGgGCGGCuGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 100693 0.66 0.922217
Target:  5'- -cUGCAgCGCCCGC--ACGGUCcGGg -3'
miRNA:   3'- guACGUgGUGGGCGgcUGCCAGuUCa -5'
8992 5' -57.4 NC_002512.2 + 60452 0.66 0.916771
Target:  5'- uGUGCGCCGCcaacauCCGCgCGACGGaCAc-- -3'
miRNA:   3'- gUACGUGGUG------GGCG-GCUGCCaGUuca -5'
8992 5' -57.4 NC_002512.2 + 79481 0.66 0.916771
Target:  5'- --cGCG-CGCCCGUgGGCGGuUCGGGg -3'
miRNA:   3'- guaCGUgGUGGGCGgCUGCC-AGUUCa -5'
8992 5' -57.4 NC_002512.2 + 140559 0.66 0.916771
Target:  5'- gGUGCACgaGCUCuCCGACcuGGUCGAGa -3'
miRNA:   3'- gUACGUGg-UGGGcGGCUG--CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 132337 0.66 0.916771
Target:  5'- aGUGCACCAgcaCCGCCucGAUGaUCGAGa -3'
miRNA:   3'- gUACGUGGUg--GGCGG--CUGCcAGUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.