miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 10546 0.66 0.808593
Target:  5'- -cGGaCGCCGGGcAGCCggCGGGCCaCgCCGAc -3'
miRNA:   3'- cuCC-GUGGCCC-UUGG--GCUUGG-G-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 77133 0.66 0.808593
Target:  5'- aGAGaccuCGCCgucgGGGGACcuuCCGAccGCCCCCGAa -3'
miRNA:   3'- -CUCc---GUGG----CCCUUG---GGCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 25080 0.66 0.808593
Target:  5'- --cGCGCCcccGGGACgCGGACCuCCCGGg -3'
miRNA:   3'- cucCGUGGc--CCUUGgGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 139285 0.66 0.808593
Target:  5'- gGGGGCGaaGGGGggcGCCCG---CCCCGGg -3'
miRNA:   3'- -CUCCGUggCCCU---UGGGCuugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 72740 0.66 0.808593
Target:  5'- -cGGCccGCCGcccgccccGGGCCCGccgccGACCCCCGAc -3'
miRNA:   3'- cuCCG--UGGCc-------CUUGGGC-----UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 10452 0.66 0.808593
Target:  5'- gGGGGCGCgGaGGAGgCCGccgccGCCCCgGGc -3'
miRNA:   3'- -CUCCGUGgC-CCUUgGGCu----UGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 34041 0.66 0.808593
Target:  5'- cGA-GCGCCGGuuGCUCGAggcguGCCCCaCGAc -3'
miRNA:   3'- -CUcCGUGGCCcuUGGGCU-----UGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 134158 0.66 0.808593
Target:  5'- cGGGUAcCCGucGACCCGGACCCUggCGGc -3'
miRNA:   3'- cUCCGU-GGCccUUGGGCUUGGGG--GCU- -5'
8994 3' -61.5 NC_002512.2 + 36908 0.66 0.808593
Target:  5'- aGAGcGCGCCGGaGGACCaagcgggaGGACCCgggggaCGAg -3'
miRNA:   3'- -CUC-CGUGGCC-CUUGGg-------CUUGGGg-----GCU- -5'
8994 3' -61.5 NC_002512.2 + 112921 0.66 0.808593
Target:  5'- cGGGGCGUCGGcGGCCCGGuggcgcgcgaGCCCgCGGa -3'
miRNA:   3'- -CUCCGUGGCCcUUGGGCU----------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 69395 0.66 0.807771
Target:  5'- -cGGCGCCGcggagauGGAACCCacGAacaugcgcucguGCCCCgCGAa -3'
miRNA:   3'- cuCCGUGGC-------CCUUGGG--CU------------UGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 55237 0.66 0.800308
Target:  5'- -cGGCACCuGGaGAACgugCCGGACgaCCCGGa -3'
miRNA:   3'- cuCCGUGG-CC-CUUG---GGCUUGg-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 64151 0.66 0.800308
Target:  5'- -cGGCGaaGGuGAAgcgaugcgccCCCGAcCCCCCGAc -3'
miRNA:   3'- cuCCGUggCC-CUU----------GGGCUuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 128597 0.66 0.800308
Target:  5'- aGAGGCcgggacguCCGGGuaccuGCCCGuguacgcuCCCCaCGAc -3'
miRNA:   3'- -CUCCGu-------GGCCCu----UGGGCuu------GGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 7893 0.66 0.800308
Target:  5'- -uGGCACaagugaGGGAgacgACCCGGACgaaCCUCGGg -3'
miRNA:   3'- cuCCGUGg-----CCCU----UGGGCUUG---GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 192198 0.66 0.800308
Target:  5'- -cGGC-UgGGGAggACCCGGACCCUuCGGc -3'
miRNA:   3'- cuCCGuGgCCCU--UGGGCUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 180050 0.66 0.800308
Target:  5'- cAGGCGgUGcGGGugCCGGacgACCCCCu- -3'
miRNA:   3'- cUCCGUgGC-CCUugGGCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 195396 0.66 0.800308
Target:  5'- cGGGUcgACCGGGAGCUCGucUUCUCGGg -3'
miRNA:   3'- cUCCG--UGGCCCUUGGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 96296 0.66 0.800308
Target:  5'- cAGGagGCCGGcccGCUCGggUCCCCGGc -3'
miRNA:   3'- cUCCg-UGGCCcu-UGGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 97232 0.66 0.799472
Target:  5'- cGAGGCGCUGGGAgaggaGCUgCGGGCCgaguguaagcgguUCCGGg -3'
miRNA:   3'- -CUCCGUGGCCCU-----UGG-GCUUGG-------------GGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.