miRNA display CGI


Results 1 - 20 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 41794 0.66 0.910058
Target:  5'- uCGCCGAuuGAUCCGGguagccCGGaaGGCCcaucguguGUCUg -3'
miRNA:   3'- -GCGGCU--UUAGGCCa-----GCCg-CCGG--------CAGG- -5'
8998 3' -59.2 NC_002512.2 + 107356 0.66 0.910058
Target:  5'- aGCCuGAuGUCCaG-CGGCGcGCCGgggagCCa -3'
miRNA:   3'- gCGG-CUuUAGGcCaGCCGC-CGGCa----GG- -5'
8998 3' -59.2 NC_002512.2 + 43927 0.66 0.910058
Target:  5'- uGCCcucGAGcUCCaGGcgcUCGuaGGCCGUCCu -3'
miRNA:   3'- gCGG---CUUuAGG-CC---AGCcgCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 38390 0.66 0.910058
Target:  5'- gGaaGGGAgcgcgCCGGUCGcCGcGCUGUCCg -3'
miRNA:   3'- gCggCUUUa----GGCCAGCcGC-CGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 80875 0.66 0.910058
Target:  5'- uGUCGGgcGGUCCG--CGGCGGCCccCCg -3'
miRNA:   3'- gCGGCU--UUAGGCcaGCCGCCGGcaGG- -5'
8998 3' -59.2 NC_002512.2 + 198712 0.66 0.910058
Target:  5'- aCGUCGAGGUCaccaGG-CGGUgcgucucccgGGCCagGUCCg -3'
miRNA:   3'- -GCGGCUUUAGg---CCaGCCG----------CCGG--CAGG- -5'
8998 3' -59.2 NC_002512.2 + 12589 0.66 0.910058
Target:  5'- aGCCGAucAUCUcc-CGGCGcGCgGUCCg -3'
miRNA:   3'- gCGGCUu-UAGGccaGCCGC-CGgCAGG- -5'
8998 3' -59.2 NC_002512.2 + 124632 0.66 0.910058
Target:  5'- gCGCCuGGAUCCGGgugcgCGGCGcGgCGcUCa -3'
miRNA:   3'- -GCGGcUUUAGGCCa----GCCGC-CgGC-AGg -5'
8998 3' -59.2 NC_002512.2 + 127560 0.66 0.910058
Target:  5'- gGCuCGucGUCCGGgaggccCGaCGGaCCGUCCg -3'
miRNA:   3'- gCG-GCuuUAGGCCa-----GCcGCC-GGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 172014 0.66 0.910058
Target:  5'- cCGCCGucgccuGGUCCGGcCGGCaGCaugCGcCCc -3'
miRNA:   3'- -GCGGCu-----UUAGGCCaGCCGcCG---GCaGG- -5'
8998 3' -59.2 NC_002512.2 + 56171 0.66 0.910058
Target:  5'- uGCCGAGca-CGGUC-GCGGgCaGUCCc -3'
miRNA:   3'- gCGGCUUuagGCCAGcCGCCgG-CAGG- -5'
8998 3' -59.2 NC_002512.2 + 150270 0.66 0.910058
Target:  5'- aCGCCGAGuaCCGcGaccCGGCGcuGCCGcCCg -3'
miRNA:   3'- -GCGGCUUuaGGC-Ca--GCCGC--CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 88865 0.66 0.910058
Target:  5'- cCGCuCGAucUCgGcucuGUCGGUcGCCGUCCu -3'
miRNA:   3'- -GCG-GCUuuAGgC----CAGCCGcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 189671 0.66 0.910058
Target:  5'- gCGUCGGcccuaCUGGUacCGGCGGCCcucgucgucgacGUCCg -3'
miRNA:   3'- -GCGGCUuua--GGCCA--GCCGCCGG------------CAGG- -5'
8998 3' -59.2 NC_002512.2 + 143538 0.66 0.910058
Target:  5'- gGCCucgucgCC-GUCGGCGGCCGcgcgucUCCc -3'
miRNA:   3'- gCGGcuuua-GGcCAGCCGCCGGC------AGG- -5'
8998 3' -59.2 NC_002512.2 + 55021 0.66 0.910058
Target:  5'- aCGUCGAucGAgagCCGGUCGG--GCCG-CCu -3'
miRNA:   3'- -GCGGCU--UUa--GGCCAGCCgcCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 49723 0.66 0.910058
Target:  5'- gCGUCGuaccugcUCgGGaCGGaGGCCGUCCu -3'
miRNA:   3'- -GCGGCuuu----AGgCCaGCCgCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 89335 0.66 0.908927
Target:  5'- -uUCGAGGUagaggaccagaaCGGcgucgaGGCGGCCGUCCu -3'
miRNA:   3'- gcGGCUUUAg-----------GCCag----CCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 83751 0.66 0.908358
Target:  5'- uGCCGAucuUCCGG-CGGCaggugcagaagacgGcGCCG-CCg -3'
miRNA:   3'- gCGGCUuu-AGGCCaGCCG--------------C-CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 44520 0.66 0.908358
Target:  5'- cCGCCGAAgguGUCgcagucgacggcgaUGG-CGGCGGCCacCCg -3'
miRNA:   3'- -GCGGCUU---UAG--------------GCCaGCCGCCGGcaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.