Results 41 - 60 of 520 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 117552 | 0.66 | 0.408606 |
Target: 5'- aCGCUGCUGUacagCGCCaaggCGUCGauGGCGCUg -3' miRNA: 3'- -GCGGCGGCG----GCGG----GCGGCgcCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 140302 | 0.66 | 0.401025 |
Target: 5'- cCGCgacaucCCGCCaCCCGCCGCaGGCGa- -3' miRNA: 3'- -GCGgc----GGCGGcGGGCGGCGcCCGCga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 107485 | 0.66 | 0.401025 |
Target: 5'- uCGUCGCCGCgaccgGCCCGCaGCGGucucuGCgGCUg -3' miRNA: 3'- -GCGGCGGCGg----CGGGCGgCGCC-----CG-CGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 85638 | 0.66 | 0.393535 |
Target: 5'- cCGCUGCCGCCGCaCUuuCCaCGGGgGUUc -3' miRNA: 3'- -GCGGCGGCGGCG-GGc-GGcGCCCgCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 133888 | 0.66 | 0.408606 |
Target: 5'- aGCgGCUcgGCCGgCgGUCcCGGGCGCUg -3' miRNA: 3'- gCGgCGG--CGGCgGgCGGcGCCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 53414 | 0.66 | 0.40329 |
Target: 5'- gGCCGCCauccaggagaagagaGCCGCggaacccgacaccCCGaCCGCGG-CGCa -3' miRNA: 3'- gCGGCGG---------------CGGCG-------------GGC-GGCGCCcGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 5726 | 0.66 | 0.393535 |
Target: 5'- cCGCgCGCCcCCGcCCCGCCucacGCGuccgccucccGGCGCg -3' miRNA: 3'- -GCG-GCGGcGGC-GGGCGG----CGC----------CCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 57739 | 0.66 | 0.378829 |
Target: 5'- aCGCaguagacCCGCUGCCCGUCGCGcuccucgucgacGGUGCc -3' miRNA: 3'- -GCGgc-----GGCGGCGGGCGGCGC------------CCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 117513 | 0.66 | 0.386136 |
Target: 5'- gGCCGCCaCCGCCaucguGCCcaagguguccggGCuGGCGCUc -3' miRNA: 3'- gCGGCGGcGGCGGg----CGG------------CGcCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 8130 | 0.66 | 0.401025 |
Target: 5'- gGCCGCCcaGCUGCCguucgacggcgCGuCCGCcaGGCGCUc -3' miRNA: 3'- gCGGCGG--CGGCGG-----------GC-GGCGc-CCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 121963 | 0.66 | 0.408606 |
Target: 5'- aGCUGacCCGgguccCCGCCCGCCGgCGGGaCGa- -3' miRNA: 3'- gCGGC--GGC-----GGCGGGCGGC-GCCC-GCga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 191669 | 0.66 | 0.378829 |
Target: 5'- gGCCGUCuCCGCUauCGUCGCGGGauuGCc -3' miRNA: 3'- gCGGCGGcGGCGG--GCGGCGCCCg--CGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 1304 | 0.66 | 0.385401 |
Target: 5'- gCGCCuGCCGCCGacaCGaCCGCGGuaaggaaGCGUc -3' miRNA: 3'- -GCGG-CGGCGGCgg-GC-GGCGCC-------CGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 94686 | 0.66 | 0.393535 |
Target: 5'- gGCgCGCaGCUGCCCucgugcgacaGCuCGCGGuGCGCg -3' miRNA: 3'- gCG-GCGgCGGCGGG----------CG-GCGCC-CGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 75625 | 0.66 | 0.378829 |
Target: 5'- gCGCaCGCgGgCaCgCGCaCGCGGGCGCUc -3' miRNA: 3'- -GCG-GCGgCgGcGgGCG-GCGCCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 111069 | 0.66 | 0.393535 |
Target: 5'- uGCCGCaucaCCGuguaggucauguCCCGCaUGCGGGUGCg -3' miRNA: 3'- gCGGCGgc--GGC------------GGGCG-GCGCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 123216 | 0.66 | 0.408606 |
Target: 5'- cCGaggaCGUCGCCGCCCagUGCGGGCu-- -3' miRNA: 3'- -GCg---GCGGCGGCGGGcgGCGCCCGcga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 76898 | 0.66 | 0.386136 |
Target: 5'- cCGCUcCCGCCGaCCCGaCCG-GGGacCGCUc -3' miRNA: 3'- -GCGGcGGCGGC-GGGC-GGCgCCC--GCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 134653 | 0.66 | 0.39279 |
Target: 5'- aCGCCGUgGCCGagugcggggCCGacgcgauccgucaCCaGCGGGCGCUc -3' miRNA: 3'- -GCGGCGgCGGCg--------GGC-------------GG-CGCCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 4167 | 0.66 | 0.401025 |
Target: 5'- aGUCGCCGCgGCU---CGCGGGCGaCa -3' miRNA: 3'- gCGGCGGCGgCGGgcgGCGCCCGC-Ga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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