miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9002 5' -59 NC_002512.2 + 149444 0.66 0.891763
Target:  5'- -cGCGGGGggagaggaaggggacCCGGg-ACGCCGCCGaCAg -3'
miRNA:   3'- gaUGCCCC---------------GGCUagUGCGGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 113414 0.66 0.889196
Target:  5'- -cGCGuGGGCCgccggGAUCAcCGCC-CCGUCc -3'
miRNA:   3'- gaUGC-CCCGG-----CUAGU-GCGGcGGUAGu -5'
9002 5' -59 NC_002512.2 + 72704 0.66 0.889196
Target:  5'- -cAUGcGGUCGAucgUCGCGCCGCCGc-- -3'
miRNA:   3'- gaUGCcCCGGCU---AGUGCGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 200439 0.66 0.889196
Target:  5'- ---aGGGGUCGucguagcgCAgGCCGCCGUUu -3'
miRNA:   3'- gaugCCCCGGCua------GUgCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 73609 0.66 0.889196
Target:  5'- -gACGGGccacucggagaaGUCGAagGCGCCGCCGggcUCGu -3'
miRNA:   3'- gaUGCCC------------CGGCUagUGCGGCGGU---AGU- -5'
9002 5' -59 NC_002512.2 + 3149 0.66 0.889196
Target:  5'- --cCGGaGcCCGGUCcCGCCGUCGUCGc -3'
miRNA:   3'- gauGCCcC-GGCUAGuGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 110668 0.66 0.889196
Target:  5'- -cGCGGGcaGCCGGUCcuggugcucgcGCaGCCGCCG-CAg -3'
miRNA:   3'- gaUGCCC--CGGCUAG-----------UG-CGGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 111112 0.66 0.889196
Target:  5'- --cCGGcGGCgGAg-GCGCCGCCcgCGg -3'
miRNA:   3'- gauGCC-CCGgCUagUGCGGCGGuaGU- -5'
9002 5' -59 NC_002512.2 + 215618 0.66 0.889196
Target:  5'- uCUGCGGcagcguGGCCGAgcUCuuCGCCguggggcugcggGCCGUCAa -3'
miRNA:   3'- -GAUGCC------CCGGCU--AGu-GCGG------------CGGUAGU- -5'
9002 5' -59 NC_002512.2 + 88145 0.66 0.882637
Target:  5'- ---aGGGGaCGAUC-CGCCcgugGCCGUCGu -3'
miRNA:   3'- gaugCCCCgGCUAGuGCGG----CGGUAGU- -5'
9002 5' -59 NC_002512.2 + 162150 0.66 0.882637
Target:  5'- -cGCGaGGCCGG-CACGCCGaCCG-CGa -3'
miRNA:   3'- gaUGCcCCGGCUaGUGCGGC-GGUaGU- -5'
9002 5' -59 NC_002512.2 + 200143 0.66 0.882637
Target:  5'- -cGCcGGGCCcccucgCGCGCCGCCAc-- -3'
miRNA:   3'- gaUGcCCCGGcua---GUGCGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 27757 0.66 0.882637
Target:  5'- -gGCGGcGGCCGAgacCGgCGCCAcCAg -3'
miRNA:   3'- gaUGCC-CCGGCUaguGCgGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 193892 0.66 0.882637
Target:  5'- -cGCGGGaGCgGGU--CGCCGCgGUCGg -3'
miRNA:   3'- gaUGCCC-CGgCUAguGCGGCGgUAGU- -5'
9002 5' -59 NC_002512.2 + 40294 0.66 0.879957
Target:  5'- --uCGGGGUCGAccucagagccuacaUCuguugcgACGUCGCCGUCGc -3'
miRNA:   3'- gauGCCCCGGCU--------------AG-------UGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 110953 0.66 0.875877
Target:  5'- --cCGGGGCCa---GCGCCGUCAgCAc -3'
miRNA:   3'- gauGCCCCGGcuagUGCGGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 16706 0.66 0.875877
Target:  5'- -gGCGGuaGCCGAUCGUGCCGaCCAcgCAg -3'
miRNA:   3'- gaUGCCc-CGGCUAGUGCGGC-GGUa-GU- -5'
9002 5' -59 NC_002512.2 + 226631 0.66 0.875877
Target:  5'- -gACGGGaCCGAgccCGCGgaCCGUCGUCAc -3'
miRNA:   3'- gaUGCCCcGGCUa--GUGC--GGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 193795 0.66 0.875877
Target:  5'- gUugGGcccuGGCCcauuGGUCGCGCCGCUucgggGUCGg -3'
miRNA:   3'- gAugCC----CCGG----CUAGUGCGGCGG-----UAGU- -5'
9002 5' -59 NC_002512.2 + 109081 0.66 0.875877
Target:  5'- --cCGGGuCCGAgagacCGCCGCCGUCc -3'
miRNA:   3'- gauGCCCcGGCUagu--GCGGCGGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.