miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 3' -64 NC_002512.2 + 6345 0.66 0.719795
Target:  5'- gGGCGcGgGGcCGGCgGGCCgCGGGCG-CGu -3'
miRNA:   3'- gCCGU-CgCC-GCCG-CUGG-GCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 154324 0.66 0.719795
Target:  5'- aCGGCGGCGGCcccgccccGGCGAgcCCgCGGAUu--- -3'
miRNA:   3'- -GCCGUCGCCG--------CCGCU--GG-GCCUGcagc -5'
9015 3' -64 NC_002512.2 + 185 0.66 0.719795
Target:  5'- gGGaCGGgGGCGagaaGgGGCCCGGGCGg-- -3'
miRNA:   3'- gCC-GUCgCCGC----CgCUGGGCCUGCagc -5'
9015 3' -64 NC_002512.2 + 95070 0.66 0.719795
Target:  5'- uCGGCAGCagcuggGGCagcaGCGAgaCCGG-CGUCGg -3'
miRNA:   3'- -GCCGUCG------CCGc---CGCUg-GGCCuGCAGC- -5'
9015 3' -64 NC_002512.2 + 229588 0.66 0.719795
Target:  5'- gGGaCGGgGGCGagaaGgGGCCCGGGCGg-- -3'
miRNA:   3'- gCC-GUCgCCGC----CgCUGGGCCUGCagc -5'
9015 3' -64 NC_002512.2 + 59000 0.66 0.719795
Target:  5'- aGGCGGCcGuCGGCGaggaGCCgcucauagaGGGCGUCGa -3'
miRNA:   3'- gCCGUCGcC-GCCGC----UGGg--------CCUGCAGC- -5'
9015 3' -64 NC_002512.2 + 131676 0.66 0.719795
Target:  5'- gGGCcGCgagGGCGGUGAgCCCGGAgCG-Ca -3'
miRNA:   3'- gCCGuCG---CCGCCGCU-GGGCCU-GCaGc -5'
9015 3' -64 NC_002512.2 + 118080 0.66 0.719795
Target:  5'- -cGCAGaCGuucGCGGCGACCaacaacccgUGGGCGUCc -3'
miRNA:   3'- gcCGUC-GC---CGCCGCUGG---------GCCUGCAGc -5'
9015 3' -64 NC_002512.2 + 80793 0.66 0.719795
Target:  5'- gCGGCgcgaggaggaggAGCGcGCGcGCGcCUCGG-CGUCGg -3'
miRNA:   3'- -GCCG------------UCGC-CGC-CGCuGGGCCuGCAGC- -5'
9015 3' -64 NC_002512.2 + 175274 0.66 0.719795
Target:  5'- gGGUAGCuGGCGGcCGcguacacguACUCGGggugcaGCGUCGa -3'
miRNA:   3'- gCCGUCG-CCGCC-GC---------UGGGCC------UGCAGC- -5'
9015 3' -64 NC_002512.2 + 215067 0.66 0.719795
Target:  5'- uCGGCGGCgucuaccgcgucGGCGG-GACCgaGGAcuuCGUCGc -3'
miRNA:   3'- -GCCGUCG------------CCGCCgCUGGg-CCU---GCAGC- -5'
9015 3' -64 NC_002512.2 + 76093 0.66 0.718892
Target:  5'- cCGGCgaucggaagcugaGGCGGgGGCG-CCgGGGuggUGUCGa -3'
miRNA:   3'- -GCCG-------------UCGCCgCCGCuGGgCCU---GCAGC- -5'
9015 3' -64 NC_002512.2 + 106229 0.66 0.717083
Target:  5'- uGGCGGCGcgcgcgcgggaaccGCGGCGcgcucucCCCGGGaccCGUCu -3'
miRNA:   3'- gCCGUCGC--------------CGCCGCu------GGGCCU---GCAGc -5'
9015 3' -64 NC_002512.2 + 18697 0.66 0.714367
Target:  5'- gGGCGGCgggcaccccgagcagGGCGGCGacgcGCUCGGGCa--- -3'
miRNA:   3'- gCCGUCG---------------CCGCCGC----UGGGCCUGcagc -5'
9015 3' -64 NC_002512.2 + 4653 0.66 0.710736
Target:  5'- aCGGgAGCGGaGGCccCgCCGGcGCGUCGa -3'
miRNA:   3'- -GCCgUCGCCgCCGcuG-GGCC-UGCAGC- -5'
9015 3' -64 NC_002512.2 + 48216 0.66 0.710736
Target:  5'- cCGGCcGCGG-GGCGcgacuaccuguACCgGGACG-CGg -3'
miRNA:   3'- -GCCGuCGCCgCCGC-----------UGGgCCUGCaGC- -5'
9015 3' -64 NC_002512.2 + 55236 0.66 0.710736
Target:  5'- gCGGCAccuggagaacGUGcCGGaCGACCCGGACuUCa -3'
miRNA:   3'- -GCCGU----------CGCcGCC-GCUGGGCCUGcAGc -5'
9015 3' -64 NC_002512.2 + 136180 0.66 0.710736
Target:  5'- cCGcGCGGCGG-GGUcGCCgGGaucGCGUCGa -3'
miRNA:   3'- -GC-CGUCGCCgCCGcUGGgCC---UGCAGC- -5'
9015 3' -64 NC_002512.2 + 75054 0.66 0.710736
Target:  5'- aCGGagGGCGGgGGaGACCgGGcggcgACGUCGa -3'
miRNA:   3'- -GCCg-UCGCCgCCgCUGGgCC-----UGCAGC- -5'
9015 3' -64 NC_002512.2 + 81693 0.66 0.710736
Target:  5'- -cGCAGCu-CGGCGGCCgGGAgggUGUCGa -3'
miRNA:   3'- gcCGUCGccGCCGCUGGgCCU---GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.