Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9016 | 5' | -56.3 | NC_002512.2 | + | 128309 | 0.66 | 0.970937 |
Target: 5'- gCCCGAGUCgCGgcaccugcucugcugCGAGCugGuC-UCGCu -3' miRNA: 3'- -GGGCUCAG-GCa--------------GCUCGugCuGcAGUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 119748 | 0.66 | 0.970663 |
Target: 5'- gCCGuGaCCGUacuaCGAGCgACG-CGUCGCg -3' miRNA: 3'- gGGCuCaGGCA----GCUCG-UGCuGCAGUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 97030 | 0.66 | 0.970663 |
Target: 5'- aCgGAGUCCGUCuucuucuGCAuCGugGUCuACu -3' miRNA: 3'- gGgCUCAGGCAGcu-----CGU-GCugCAG-UG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 155476 | 0.66 | 0.970663 |
Target: 5'- aCCgCGAGUUCGUCG-GCAC--CGUC-Cg -3' miRNA: 3'- -GG-GCUCAGGCAGCuCGUGcuGCAGuG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 130011 | 0.66 | 0.970663 |
Target: 5'- gCCCGuGUCCG-CGcucCGCGugGUuCACc -3' miRNA: 3'- -GGGCuCAGGCaGCuc-GUGCugCA-GUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 82075 | 0.66 | 0.970663 |
Target: 5'- cCCCGAGgCUcUCGAGCcACgGGCG-CGCg -3' miRNA: 3'- -GGGCUCaGGcAGCUCG-UG-CUGCaGUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 104078 | 0.66 | 0.970663 |
Target: 5'- uCCCGucGUCCGUCcGGuCGcCGugGUUGCc -3' miRNA: 3'- -GGGCu-CAGGCAGcUC-GU-GCugCAGUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 126755 | 0.66 | 0.967826 |
Target: 5'- gCCCGAGacgCC-UCgGGGCGCGGCGgcgGCg -3' miRNA: 3'- -GGGCUCa--GGcAG-CUCGUGCUGCag-UG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 209280 | 0.66 | 0.967826 |
Target: 5'- uUCGAGgaCGUgGAGCGCuGCGUCAa -3' miRNA: 3'- gGGCUCagGCAgCUCGUGcUGCAGUg -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 82112 | 0.66 | 0.967826 |
Target: 5'- uUCCGAG-CCG-CGAGuCGgGACGgccgCGCu -3' miRNA: 3'- -GGGCUCaGGCaGCUC-GUgCUGCa---GUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 16889 | 0.66 | 0.967826 |
Target: 5'- cCCCGGGcCCGaCGGcCGCGGCGacgaugaggUCGCa -3' miRNA: 3'- -GGGCUCaGGCaGCUcGUGCUGC---------AGUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 12302 | 0.66 | 0.967826 |
Target: 5'- cCCCGAGgcggcgCCGcCGgaccGGCuCGcCGUCGCg -3' miRNA: 3'- -GGGCUCa-----GGCaGC----UCGuGCuGCAGUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 125866 | 0.66 | 0.967826 |
Target: 5'- uCCCucuGGUCCGgCGGGCACGGCu---- -3' miRNA: 3'- -GGGc--UCAGGCaGCUCGUGCUGcagug -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 103096 | 0.66 | 0.967826 |
Target: 5'- uCCCGGGgaCGggCGcGGCACG-CGUCGCc -3' miRNA: 3'- -GGGCUCagGCa-GC-UCGUGCuGCAGUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 136573 | 0.66 | 0.967826 |
Target: 5'- aUCCGGGUcagcCCGgugcgCGGGUugGACGcgUACa -3' miRNA: 3'- -GGGCUCA----GGCa----GCUCGugCUGCa-GUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 134768 | 0.66 | 0.967826 |
Target: 5'- gUCCG-GUUCGUCGgcgGGCcCGcCGUCGCc -3' miRNA: 3'- -GGGCuCAGGCAGC---UCGuGCuGCAGUG- -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 132005 | 0.66 | 0.967826 |
Target: 5'- cCCCGGGcgCCGgggggaccUCG-GCgGCGACGUCGu -3' miRNA: 3'- -GGGCUCa-GGC--------AGCuCG-UGCUGCAGUg -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 78645 | 0.66 | 0.9648 |
Target: 5'- aCCGAgaugauggcGUCgGUCGAGC-CGGCGcCGg -3' miRNA: 3'- gGGCU---------CAGgCAGCUCGuGCUGCaGUg -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 100345 | 0.66 | 0.9648 |
Target: 5'- -gCGGGcgCCGgccaCGcAGCACGGCGUCGu -3' miRNA: 3'- ggGCUCa-GGCa---GC-UCGUGCUGCAGUg -5' |
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9016 | 5' | -56.3 | NC_002512.2 | + | 83648 | 0.66 | 0.9648 |
Target: 5'- uCCCG-GUCgaGgcaGAGCGCGugGUC-Ca -3' miRNA: 3'- -GGGCuCAGg-Cag-CUCGUGCugCAGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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