miRNA display CGI


Results 1 - 20 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 128309 0.66 0.970937
Target:  5'- gCCCGAGUCgCGgcaccugcucugcugCGAGCugGuC-UCGCu -3'
miRNA:   3'- -GGGCUCAG-GCa--------------GCUCGugCuGcAGUG- -5'
9016 5' -56.3 NC_002512.2 + 104078 0.66 0.970663
Target:  5'- uCCCGucGUCCGUCcGGuCGcCGugGUUGCc -3'
miRNA:   3'- -GGGCu-CAGGCAGcUC-GU-GCugCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 82075 0.66 0.970663
Target:  5'- cCCCGAGgCUcUCGAGCcACgGGCG-CGCg -3'
miRNA:   3'- -GGGCUCaGGcAGCUCG-UG-CUGCaGUG- -5'
9016 5' -56.3 NC_002512.2 + 130011 0.66 0.970663
Target:  5'- gCCCGuGUCCG-CGcucCGCGugGUuCACc -3'
miRNA:   3'- -GGGCuCAGGCaGCuc-GUGCugCA-GUG- -5'
9016 5' -56.3 NC_002512.2 + 155476 0.66 0.970663
Target:  5'- aCCgCGAGUUCGUCG-GCAC--CGUC-Cg -3'
miRNA:   3'- -GG-GCUCAGGCAGCuCGUGcuGCAGuG- -5'
9016 5' -56.3 NC_002512.2 + 97030 0.66 0.970663
Target:  5'- aCgGAGUCCGUCuucuucuGCAuCGugGUCuACu -3'
miRNA:   3'- gGgCUCAGGCAGcu-----CGU-GCugCAG-UG- -5'
9016 5' -56.3 NC_002512.2 + 119748 0.66 0.970663
Target:  5'- gCCGuGaCCGUacuaCGAGCgACG-CGUCGCg -3'
miRNA:   3'- gGGCuCaGGCA----GCUCG-UGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 82112 0.66 0.967826
Target:  5'- uUCCGAG-CCG-CGAGuCGgGACGgccgCGCu -3'
miRNA:   3'- -GGGCUCaGGCaGCUC-GUgCUGCa---GUG- -5'
9016 5' -56.3 NC_002512.2 + 16889 0.66 0.967826
Target:  5'- cCCCGGGcCCGaCGGcCGCGGCGacgaugaggUCGCa -3'
miRNA:   3'- -GGGCUCaGGCaGCUcGUGCUGC---------AGUG- -5'
9016 5' -56.3 NC_002512.2 + 209280 0.66 0.967826
Target:  5'- uUCGAGgaCGUgGAGCGCuGCGUCAa -3'
miRNA:   3'- gGGCUCagGCAgCUCGUGcUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 12302 0.66 0.967826
Target:  5'- cCCCGAGgcggcgCCGcCGgaccGGCuCGcCGUCGCg -3'
miRNA:   3'- -GGGCUCa-----GGCaGC----UCGuGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 126755 0.66 0.967826
Target:  5'- gCCCGAGacgCC-UCgGGGCGCGGCGgcgGCg -3'
miRNA:   3'- -GGGCUCa--GGcAG-CUCGUGCUGCag-UG- -5'
9016 5' -56.3 NC_002512.2 + 125866 0.66 0.967826
Target:  5'- uCCCucuGGUCCGgCGGGCACGGCu---- -3'
miRNA:   3'- -GGGc--UCAGGCaGCUCGUGCUGcagug -5'
9016 5' -56.3 NC_002512.2 + 103096 0.66 0.967826
Target:  5'- uCCCGGGgaCGggCGcGGCACG-CGUCGCc -3'
miRNA:   3'- -GGGCUCagGCa-GC-UCGUGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 136573 0.66 0.967826
Target:  5'- aUCCGGGUcagcCCGgugcgCGGGUugGACGcgUACa -3'
miRNA:   3'- -GGGCUCA----GGCa----GCUCGugCUGCa-GUG- -5'
9016 5' -56.3 NC_002512.2 + 134768 0.66 0.967826
Target:  5'- gUCCG-GUUCGUCGgcgGGCcCGcCGUCGCc -3'
miRNA:   3'- -GGGCuCAGGCAGC---UCGuGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 132005 0.66 0.967826
Target:  5'- cCCCGGGcgCCGgggggaccUCG-GCgGCGACGUCGu -3'
miRNA:   3'- -GGGCUCa-GGC--------AGCuCG-UGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 100345 0.66 0.9648
Target:  5'- -gCGGGcgCCGgccaCGcAGCACGGCGUCGu -3'
miRNA:   3'- ggGCUCa-GGCa---GC-UCGUGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 78645 0.66 0.9648
Target:  5'- aCCGAgaugauggcGUCgGUCGAGC-CGGCGcCGg -3'
miRNA:   3'- gGGCU---------CAGgCAGCUCGuGCUGCaGUg -5'
9016 5' -56.3 NC_002512.2 + 83648 0.66 0.9648
Target:  5'- uCCCG-GUCgaGgcaGAGCGCGugGUC-Ca -3'
miRNA:   3'- -GGGCuCAGg-Cag-CUCGUGCugCAGuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.