miRNA display CGI


Results 1 - 20 of 296 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 5' -57.7 NC_002512.2 + 3111 0.66 0.946584
Target:  5'- gCGUCGCCCGagaCGuCCUcgcccUCCGCGucguCCg -3'
miRNA:   3'- -GCAGUGGGC---GCuGGAca---AGGCGCu---GG- -5'
9019 5' -57.7 NC_002512.2 + 172692 0.66 0.946584
Target:  5'- cCGUCcUgCGCGACCgcugCCGCGAg- -3'
miRNA:   3'- -GCAGuGgGCGCUGGacaaGGCGCUgg -5'
9019 5' -57.7 NC_002512.2 + 78966 0.66 0.946584
Target:  5'- aGUCcgGCUCG-GACUUagcGUcgUCCGCGGCCg -3'
miRNA:   3'- gCAG--UGGGCgCUGGA---CA--AGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 78304 0.66 0.946584
Target:  5'- uCGUCucguuUCCGCGACUgcga--GCGACCg -3'
miRNA:   3'- -GCAGu----GGGCGCUGGacaaggCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 98656 0.66 0.946584
Target:  5'- gGcCA-CCGCGGCCUccgaCCGCGACg -3'
miRNA:   3'- gCaGUgGGCGCUGGAcaa-GGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 120158 0.66 0.946584
Target:  5'- gGUCGaacucCUCGCGGCuCUcgUCCGUGAUCa -3'
miRNA:   3'- gCAGU-----GGGCGCUG-GAcaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 182056 0.66 0.946584
Target:  5'- uGUCggccaGCCgCGcCGACCUcagCCGCGGCUc -3'
miRNA:   3'- gCAG-----UGG-GC-GCUGGAcaaGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 163511 0.66 0.946584
Target:  5'- -uUCACCUaCGACauccUCCGCGACUa -3'
miRNA:   3'- gcAGUGGGcGCUGgacaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 186284 0.66 0.946584
Target:  5'- cCG-CAgccUCCGCGuCCUcgUCCGCGACg -3'
miRNA:   3'- -GCaGU---GGGCGCuGGAcaAGGCGCUGg -5'
9019 5' -57.7 NC_002512.2 + 76508 0.66 0.946584
Target:  5'- aCGUCGCuCCG-GACCgccagCCGCcGCCc -3'
miRNA:   3'- -GCAGUG-GGCgCUGGacaa-GGCGcUGG- -5'
9019 5' -57.7 NC_002512.2 + 129726 0.66 0.946584
Target:  5'- uGUCGauCCCGC--CCUGUUgUCGuCGACCg -3'
miRNA:   3'- gCAGU--GGGCGcuGGACAA-GGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 69553 0.66 0.946584
Target:  5'- uCGUCACCC-CGACgUG--CCGCacGAUCa -3'
miRNA:   3'- -GCAGUGGGcGCUGgACaaGGCG--CUGG- -5'
9019 5' -57.7 NC_002512.2 + 194936 0.66 0.946171
Target:  5'- gGUCGCggccgcuCCGCucCCcGUcgCCGCGACCc -3'
miRNA:   3'- gCAGUG-------GGCGcuGGaCAa-GGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 39676 0.66 0.942365
Target:  5'- cCGUC-CCgGaCGACCgcg-CCGcCGACCu -3'
miRNA:   3'- -GCAGuGGgC-GCUGGacaaGGC-GCUGG- -5'
9019 5' -57.7 NC_002512.2 + 225818 0.66 0.942365
Target:  5'- gGUgGCCUGgGACCUcGagCCGCGggggaucgaGCCg -3'
miRNA:   3'- gCAgUGGGCgCUGGA-CaaGGCGC---------UGG- -5'
9019 5' -57.7 NC_002512.2 + 197801 0.66 0.942365
Target:  5'- --aCACCCG-GGCCgccaUCgGCGACCc -3'
miRNA:   3'- gcaGUGGGCgCUGGaca-AGgCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 226121 0.66 0.942365
Target:  5'- gCGUCaggacaACCCGaGACgUG-UCCGUGAUCu -3'
miRNA:   3'- -GCAG------UGGGCgCUGgACaAGGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 98121 0.66 0.942365
Target:  5'- cCGcUugCCGgGGCgCUGgucgUCGCGGCCg -3'
miRNA:   3'- -GCaGugGGCgCUG-GACaa--GGCGCUGG- -5'
9019 5' -57.7 NC_002512.2 + 221019 0.66 0.942365
Target:  5'- uGUCACCaCGCGGCCaccaacgggGUgCCGCccGGCa -3'
miRNA:   3'- gCAGUGG-GCGCUGGa--------CAaGGCG--CUGg -5'
9019 5' -57.7 NC_002512.2 + 83028 0.66 0.942365
Target:  5'- aGUgGCCCcgcGCGAgcucgagcacCCUGggCCagGCGACCu -3'
miRNA:   3'- gCAgUGGG---CGCU----------GGACaaGG--CGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.