miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 5' -55.6 NC_002512.2 + 55194 0.66 0.974583
Target:  5'- uUACGUGggUauaaaaaGGGUagugccgUCGAGCUCUGc -3'
miRNA:   3'- uGUGCGCuuGg------CCCAa------AGCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 125140 0.66 0.974583
Target:  5'- cACGCGUGAACCGcGG----GGGCcCCGg -3'
miRNA:   3'- -UGUGCGCUUGGC-CCaaagCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 5167 0.66 0.974583
Target:  5'- -gGCGCG-ACCGGGg--CG-GCggCCGg -3'
miRNA:   3'- ugUGCGCuUGGCCCaaaGCuCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 17112 0.66 0.974583
Target:  5'- -gACGCGGACaccaGGGccgagCGAGC-CCGc -3'
miRNA:   3'- ugUGCGCUUGg---CCCaaa--GCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 83070 0.66 0.974583
Target:  5'- cGCGCGCGAAggucuCCaGGUccCGGGCcuccUCCGg -3'
miRNA:   3'- -UGUGCGCUU-----GGcCCAaaGCUCG----AGGC- -5'
9032 5' -55.6 NC_002512.2 + 150508 0.66 0.974583
Target:  5'- cGCcCGCGggUCGGGg--UGcAGUUCCa -3'
miRNA:   3'- -UGuGCGCuuGGCCCaaaGC-UCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 36190 0.66 0.974583
Target:  5'- gACGCGUGcAACCGGccccuaucCGAGgUCCGa -3'
miRNA:   3'- -UGUGCGC-UUGGCCcaaa----GCUCgAGGC- -5'
9032 5' -55.6 NC_002512.2 + 209434 0.66 0.974331
Target:  5'- cCGCGCGGaugaccgucaucgGCCGGcugaucUUCG-GCUCCGg -3'
miRNA:   3'- uGUGCGCU-------------UGGCCca----AAGCuCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 87816 0.66 0.974331
Target:  5'- uGCACccccaGCGAucccccgGCCGGGcgUCGGGC-CCu -3'
miRNA:   3'- -UGUG-----CGCU-------UGGCCCaaAGCUCGaGGc -5'
9032 5' -55.6 NC_002512.2 + 164892 0.66 0.972248
Target:  5'- -gGCGCG-ACgGGGUUgaucaagacgcagugCGAGCUCUc -3'
miRNA:   3'- ugUGCGCuUGgCCCAAa--------------GCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 77551 0.66 0.971979
Target:  5'- uACGuCGCGGACggCGGGUcgcccaCGGGCgUCCGa -3'
miRNA:   3'- -UGU-GCGCUUG--GCCCAaa----GCUCG-AGGC- -5'
9032 5' -55.6 NC_002512.2 + 117717 0.66 0.971979
Target:  5'- cCGCGCGug-CGGGc-UCGAGCgCCGg -3'
miRNA:   3'- uGUGCGCuugGCCCaaAGCUCGaGGC- -5'
9032 5' -55.6 NC_002512.2 + 121507 0.66 0.971162
Target:  5'- -gGCGCGAGCaugaacgucauccuCGGG----GAGCUCCGg -3'
miRNA:   3'- ugUGCGCUUG--------------GCCCaaagCUCGAGGC- -5'
9032 5' -55.6 NC_002512.2 + 20789 0.66 0.969189
Target:  5'- gACACGgGGugacgacCCGGacgUCGGGCUCCc -3'
miRNA:   3'- -UGUGCgCUu------GGCCcaaAGCUCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 111913 0.66 0.969189
Target:  5'- cCGCGCGggUuguuCGGGUgcCGgaacAGCUCCa -3'
miRNA:   3'- uGUGCGCuuG----GCCCAaaGC----UCGAGGc -5'
9032 5' -55.6 NC_002512.2 + 104690 0.66 0.969189
Target:  5'- gACACGCGcGACCGGaGUcUCGucCUCUc -3'
miRNA:   3'- -UGUGCGC-UUGGCC-CAaAGCucGAGGc -5'
9032 5' -55.6 NC_002512.2 + 221399 0.66 0.969189
Target:  5'- -gGCGCGGGCgGGGaggcggCGGGUcugUCCGa -3'
miRNA:   3'- ugUGCGCUUGgCCCaaa---GCUCG---AGGC- -5'
9032 5' -55.6 NC_002512.2 + 196407 0.66 0.969189
Target:  5'- gGCGCGgGGACgCGGGgggCG-GCggCCGg -3'
miRNA:   3'- -UGUGCgCUUG-GCCCaaaGCuCGa-GGC- -5'
9032 5' -55.6 NC_002512.2 + 96737 0.66 0.969189
Target:  5'- cCGCGgGAACCGGacgagCGAGCggggccccgUCCGa -3'
miRNA:   3'- uGUGCgCUUGGCCcaaa-GCUCG---------AGGC- -5'
9032 5' -55.6 NC_002512.2 + 219940 0.66 0.968314
Target:  5'- gACGCGCGGGggaggguggaucccCCGGGUcgCGcGCUCa- -3'
miRNA:   3'- -UGUGCGCUU--------------GGCCCAaaGCuCGAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.