miRNA display CGI


Results 1 - 20 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 135606 0.66 0.980046
Target:  5'- cGCUcccCGGCCgugGACGCCAgcgaguUCUCGGg- -3'
miRNA:   3'- -CGA---GCUGG---CUGCGGUagu---AGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 76692 0.66 0.980046
Target:  5'- cGCUCGuCUGAUGUCGUCGg--CGG-Cg -3'
miRNA:   3'- -CGAGCuGGCUGCGGUAGUagaGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 121202 0.66 0.980046
Target:  5'- cGCU-GGCCGacaGCGCCcUCGUCgUCGG-Cg -3'
miRNA:   3'- -CGAgCUGGC---UGCGGuAGUAG-AGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 137794 0.66 0.980046
Target:  5'- cGCUCGGcgggccgcgcguCCGGCgGCCGUcCGUCUCGu-- -3'
miRNA:   3'- -CGAGCU------------GGCUG-CGGUA-GUAGAGCcag -5'
9034 3' -55.1 NC_002512.2 + 20671 0.66 0.979834
Target:  5'- uGUUUGACCGugacgggccgcagGCGCCg----CUCGGUCu -3'
miRNA:   3'- -CGAGCUGGC-------------UGCGGuaguaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 25873 0.66 0.979406
Target:  5'- -gUCGGCCcgcacgaagccgaaGAgGCgGUCGUaCUCGGUCc -3'
miRNA:   3'- cgAGCUGG--------------CUgCGgUAGUA-GAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 24375 0.66 0.978081
Target:  5'- cGCUCGAagucgucguccuccgCGACGCCGUCGUC-CGc-- -3'
miRNA:   3'- -CGAGCUg--------------GCUGCGGUAGUAGaGCcag -5'
9034 3' -55.1 NC_002512.2 + 4556 0.66 0.977854
Target:  5'- gGCgCGACCGACGgCugcggCGUCUgGGg- -3'
miRNA:   3'- -CGaGCUGGCUGCgGua---GUAGAgCCag -5'
9034 3' -55.1 NC_002512.2 + 188632 0.66 0.977854
Target:  5'- cGCUCGggccgcaagggcGCCGGCGgcggcggcggcCCGUCGUCcgaccgcggCGGUCu -3'
miRNA:   3'- -CGAGC------------UGGCUGC-----------GGUAGUAGa--------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 108736 0.66 0.977854
Target:  5'- cCUgGGCCG-CgGCCggCGUCUCGGcCg -3'
miRNA:   3'- cGAgCUGGCuG-CGGuaGUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 92989 0.66 0.977854
Target:  5'- cGCcCGACCugGugGCC---GUCUCGGUg -3'
miRNA:   3'- -CGaGCUGG--CugCGGuagUAGAGCCAg -5'
9034 3' -55.1 NC_002512.2 + 178590 0.66 0.977854
Target:  5'- gGCUCuucagucuGGCCGcCGCCGa---CUCGGUCg -3'
miRNA:   3'- -CGAG--------CUGGCuGCGGUaguaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 75209 0.66 0.977854
Target:  5'- cGCUCGgaGCCGGacgguCGCCcgaCGUCggaCGGUCg -3'
miRNA:   3'- -CGAGC--UGGCU-----GCGGua-GUAGa--GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 172260 0.66 0.977854
Target:  5'- uGCUCGcCUcACGCCcg---CUCGGUCg -3'
miRNA:   3'- -CGAGCuGGcUGCGGuaguaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 9117 0.66 0.977854
Target:  5'- -aUCGACa-ACGuaggaCCGUgGUCUCGGUCa -3'
miRNA:   3'- cgAGCUGgcUGC-----GGUAgUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 128773 0.66 0.977854
Target:  5'- cCUCGACgaGGCGCUGcUCAcccUCUgGGUCu -3'
miRNA:   3'- cGAGCUGg-CUGCGGU-AGU---AGAgCCAG- -5'
9034 3' -55.1 NC_002512.2 + 24872 0.66 0.977625
Target:  5'- gGCccCGACCGAgGCgCGUCGUUUcgcccccgccuucCGGUCc -3'
miRNA:   3'- -CGa-GCUGGCUgCG-GUAGUAGA-------------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 78436 0.66 0.975488
Target:  5'- uUUCGGCCGGCGCCA---UCUUGaGcCa -3'
miRNA:   3'- cGAGCUGGCUGCGGUaguAGAGC-CaG- -5'
9034 3' -55.1 NC_002512.2 + 39535 0.66 0.975488
Target:  5'- ---gGGCCGACGCCcccGUCGUCguagaGGUa -3'
miRNA:   3'- cgagCUGGCUGCGG---UAGUAGag---CCAg -5'
9034 3' -55.1 NC_002512.2 + 203960 0.66 0.975488
Target:  5'- cGC-CGGCCGACGCaCAUCGaccUCaUGGa- -3'
miRNA:   3'- -CGaGCUGGCUGCG-GUAGU---AGaGCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.