miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 18952 0.65 0.982635
Target:  5'- cCUCGggGCGGACUG-CAUCgCGGcgaugaugccggagAGCCg -3'
miRNA:   3'- uGAGU--UGCCUGACuGUGGgGCU--------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 103485 0.65 0.982635
Target:  5'- gGCgUCGACGGcGCccGGgGCCCCGGgcgcucucccgggcGGCCa -3'
miRNA:   3'- -UG-AGUUGCC-UGa-CUgUGGGGCU--------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 51353 0.65 0.982635
Target:  5'- gGCUCGAUGccggagacggagauGGCgGACGCCCuCaGAGCCc -3'
miRNA:   3'- -UGAGUUGC--------------CUGaCUGUGGG-GcUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 54592 0.66 0.981258
Target:  5'- -gUCGAC--GCUG-CACCCCGAguacguguacgcGGCCg -3'
miRNA:   3'- ugAGUUGccUGACuGUGGGGCU------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 53889 0.66 0.981258
Target:  5'- gAC-CGACGGACgagGAgAUCUCGGucGCCu -3'
miRNA:   3'- -UGaGUUGCCUGa--CUgUGGGGCUu-CGG- -5'
9036 3' -54.7 NC_002512.2 + 47912 0.66 0.981258
Target:  5'- gACgu-ACGGugUGACguuCCCGAcGCCu -3'
miRNA:   3'- -UGaguUGCCugACUGug-GGGCUuCGG- -5'
9036 3' -54.7 NC_002512.2 + 11288 0.66 0.981258
Target:  5'- -gUCcGCGGGC-GAgACCCCGggGa- -3'
miRNA:   3'- ugAGuUGCCUGaCUgUGGGGCuuCgg -5'
9036 3' -54.7 NC_002512.2 + 78849 0.66 0.981258
Target:  5'- cGCgUGACGGGCcGcCGCCUCGAGGUg -3'
miRNA:   3'- -UGaGUUGCCUGaCuGUGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 29771 0.66 0.981258
Target:  5'- gACgCGACGGcgauGCUGAagUACCCCGgcGaCCc -3'
miRNA:   3'- -UGaGUUGCC----UGACU--GUGGGGCuuC-GG- -5'
9036 3' -54.7 NC_002512.2 + 7690 0.66 0.981258
Target:  5'- gACgaagaAACGGAC-GACGCCggCCGcGGCCc -3'
miRNA:   3'- -UGag---UUGCCUGaCUGUGG--GGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 227050 0.66 0.981258
Target:  5'- ---gAACGGGCgGACGgCC-GGAGCCg -3'
miRNA:   3'- ugagUUGCCUGaCUGUgGGgCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 2975 0.66 0.981258
Target:  5'- uCUC-GCGGGCcuccuUGGC-CCCCGcguGGCCc -3'
miRNA:   3'- uGAGuUGCCUG-----ACUGuGGGGCu--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 73806 0.66 0.981054
Target:  5'- cCUCGACGaACUGccgGCGCCCgGcgucgauGAGCCu -3'
miRNA:   3'- uGAGUUGCcUGAC---UGUGGGgC-------UUCGG- -5'
9036 3' -54.7 NC_002512.2 + 108216 0.66 0.980643
Target:  5'- cACUCGGCGGcgacgugaucaaACaggGACGCCgCGAgauccaggacgcggAGCCg -3'
miRNA:   3'- -UGAGUUGCC------------UGa--CUGUGGgGCU--------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 49287 0.66 0.97915
Target:  5'- gACUCcgacgcuguguGACGGACgccacggcccUGAUagagaGCCaCCGGAGCCc -3'
miRNA:   3'- -UGAG-----------UUGCCUG----------ACUG-----UGG-GGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 45419 0.66 0.97915
Target:  5'- cGCUCGACGG-C-GGCGCCggCCGcGGCg -3'
miRNA:   3'- -UGAGUUGCCuGaCUGUGG--GGCuUCGg -5'
9036 3' -54.7 NC_002512.2 + 223198 0.66 0.97915
Target:  5'- cGCcCGACGGGgacGGCGUCCCGGAGCg -3'
miRNA:   3'- -UGaGUUGCCUga-CUGUGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 28946 0.66 0.97915
Target:  5'- cACUCGACGGcGCaGAagAUCCUG-AGCCa -3'
miRNA:   3'- -UGAGUUGCC-UGaCUg-UGGGGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 140189 0.66 0.97915
Target:  5'- uGCUCAAgcacaucgaguuCGGcCUGccGCucuCCCCGAGGCa -3'
miRNA:   3'- -UGAGUU------------GCCuGAC--UGu--GGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 124516 0.66 0.97915
Target:  5'- -gUCGAUGGGuCUGA-ACCCCGccGUCa -3'
miRNA:   3'- ugAGUUGCCU-GACUgUGGGGCuuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.