miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 5' -58.2 NC_002512.2 + 118767 0.65 0.928251
Target:  5'- -aGGaccCCGCGGGCGGCGCcuccgccgCCGGg -3'
miRNA:   3'- agCC---GGCGCCUGCUGCGauuca---GGCU- -5'
9036 5' -58.2 NC_002512.2 + 96732 0.66 0.92624
Target:  5'- cCGGcCCGCGGgaaccggacgagcgaGCGGgGCcccGUCCGAg -3'
miRNA:   3'- aGCC-GGCGCC---------------UGCUgCGauuCAGGCU- -5'
9036 5' -58.2 NC_002512.2 + 148085 0.66 0.924194
Target:  5'- gCGGCgCGuCGGcccuCGugGCUaGAGUCgCGAu -3'
miRNA:   3'- aGCCG-GC-GCCu---GCugCGA-UUCAG-GCU- -5'
9036 5' -58.2 NC_002512.2 + 150250 0.66 0.924194
Target:  5'- cUCGGacgaCGagggGGACGACGCcGAGUaCCGc -3'
miRNA:   3'- -AGCCg---GCg---CCUGCUGCGaUUCA-GGCu -5'
9036 5' -58.2 NC_002512.2 + 107013 0.66 0.924194
Target:  5'- gUCGGCCGagagcCGGGCG-CGCUcccgacggaaGAGggacCCGAc -3'
miRNA:   3'- -AGCCGGC-----GCCUGCuGCGA----------UUCa---GGCU- -5'
9036 5' -58.2 NC_002512.2 + 190013 0.66 0.924194
Target:  5'- gUUGGCCGCGGuCGAgGCcGAcaugauccucuGcUCCGAc -3'
miRNA:   3'- -AGCCGGCGCCuGCUgCGaUU-----------C-AGGCU- -5'
9036 5' -58.2 NC_002512.2 + 151567 0.66 0.924194
Target:  5'- gCGGUC-CGGACGGuCGCUcgcAGUCgCGGa -3'
miRNA:   3'- aGCCGGcGCCUGCU-GCGAu--UCAG-GCU- -5'
9036 5' -58.2 NC_002512.2 + 226638 0.66 0.924194
Target:  5'- cCGaGcCCGCGGAccgucgucaccCGACGCgccGGGUCCa- -3'
miRNA:   3'- aGC-C-GGCGCCU-----------GCUGCGa--UUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 133419 0.66 0.924194
Target:  5'- aCGGCCGCGcGGuCcGCGCguuuGGUuCCGGg -3'
miRNA:   3'- aGCCGGCGC-CU-GcUGCGau--UCA-GGCU- -5'
9036 5' -58.2 NC_002512.2 + 52792 0.66 0.924194
Target:  5'- cUGGUCGCGGA-GACGCagcgGGGgCUGAc -3'
miRNA:   3'- aGCCGGCGCCUgCUGCGa---UUCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 181586 0.66 0.924194
Target:  5'- gCGGCgGCagGGGCGGCG---GGUCCGc -3'
miRNA:   3'- aGCCGgCG--CCUGCUGCgauUCAGGCu -5'
9036 5' -58.2 NC_002512.2 + 6673 0.66 0.924194
Target:  5'- cCGGCCG-GGACG-CGCUccGGGacgCCGu -3'
miRNA:   3'- aGCCGGCgCCUGCuGCGA--UUCa--GGCu -5'
9036 5' -58.2 NC_002512.2 + 40354 0.66 0.924194
Target:  5'- --uGCCGCGGACGccgacCGCggcGAGcCCGGg -3'
miRNA:   3'- agcCGGCGCCUGCu----GCGa--UUCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 127752 0.66 0.924194
Target:  5'- gCGGCCGUaGACGGC-CaGGGUCCc- -3'
miRNA:   3'- aGCCGGCGcCUGCUGcGaUUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 90518 0.66 0.924194
Target:  5'- cCGGCgGCGGACGACGggAAcg-CGGu -3'
miRNA:   3'- aGCCGgCGCCUGCUGCgaUUcagGCU- -5'
9036 5' -58.2 NC_002512.2 + 58043 0.66 0.923677
Target:  5'- cCGGCCGCGGcCGGaccguccCGC--GGUaCCGGa -3'
miRNA:   3'- aGCCGGCGCCuGCU-------GCGauUCA-GGCU- -5'
9036 5' -58.2 NC_002512.2 + 35637 0.66 0.919998
Target:  5'- gCGGCCGCGaauaucaucaugcucGACGACGacaccggcacgAAGUCCc- -3'
miRNA:   3'- aGCCGGCGC---------------CUGCUGCga---------UUCAGGcu -5'
9036 5' -58.2 NC_002512.2 + 15476 0.66 0.918928
Target:  5'- cUCGGgCGCGG-CG-CGCUccGGcCCGAa -3'
miRNA:   3'- -AGCCgGCGCCuGCuGCGAu-UCaGGCU- -5'
9036 5' -58.2 NC_002512.2 + 57041 0.66 0.918928
Target:  5'- -aGGCCGCGucCGACGaccgGGGggcgCCGGg -3'
miRNA:   3'- agCCGGCGCcuGCUGCga--UUCa---GGCU- -5'
9036 5' -58.2 NC_002512.2 + 29972 0.66 0.918928
Target:  5'- cCGGCCGCgaacGGACGACagacacggGC--GGUCuCGAg -3'
miRNA:   3'- aGCCGGCG----CCUGCUG--------CGauUCAG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.