miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 3' -58.9 NC_002512.2 + 98949 0.66 0.902874
Target:  5'- cCGCCUcgagcucagUCGgugUCCGGGgacucCAGAGUGCGaGCc -3'
miRNA:   3'- -GUGGA---------AGCa--GGGCCU-----GUCUCGCGC-CG- -5'
9045 3' -58.9 NC_002512.2 + 90893 0.66 0.902874
Target:  5'- -uCCggaUCGUCCgGGACGGccGGacugGCGGCc -3'
miRNA:   3'- guGGa--AGCAGGgCCUGUC--UCg---CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 124182 0.66 0.902874
Target:  5'- gCACCUggcugcUCGUCCgccggGGACAGAGgcacCGCGaGUa -3'
miRNA:   3'- -GUGGA------AGCAGGg----CCUGUCUC----GCGC-CG- -5'
9045 3' -58.9 NC_002512.2 + 148255 0.66 0.902874
Target:  5'- gCGCCga-G-CCUGGACGuGGCGaCGGCc -3'
miRNA:   3'- -GUGGaagCaGGGCCUGUcUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 120646 0.66 0.902874
Target:  5'- cCACC-UCuUCCCGGGacacCAGAGC-CGGg -3'
miRNA:   3'- -GUGGaAGcAGGGCCU----GUCUCGcGCCg -5'
9045 3' -58.9 NC_002512.2 + 128269 0.66 0.902874
Target:  5'- gACUcgCGUCCCGGcGCcGGGCcGaCGGCc -3'
miRNA:   3'- gUGGaaGCAGGGCC-UGuCUCG-C-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 144505 0.66 0.902874
Target:  5'- aCGCUg-CGcugCCCGGACucgguccgcguGGGCGCGGUc -3'
miRNA:   3'- -GUGGaaGCa--GGGCCUGu----------CUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 184577 0.66 0.902874
Target:  5'- gACCcgCGggCCGG-CAGGGCgGCGGUc -3'
miRNA:   3'- gUGGaaGCagGGCCuGUCUCG-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 227653 0.66 0.902874
Target:  5'- gCGCC--CGggUCCGGAggaAGAGCGgCGGCg -3'
miRNA:   3'- -GUGGaaGCa-GGGCCUg--UCUCGC-GCCG- -5'
9045 3' -58.9 NC_002512.2 + 109008 0.66 0.902874
Target:  5'- gCGCCggcggcgUCGUCCugCGGACc---CGCGGCg -3'
miRNA:   3'- -GUGGa------AGCAGG--GCCUGucucGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 95771 0.66 0.902874
Target:  5'- cCGCCUggacgggggCGUCCgagCGGuaggcgcCGGGGCGCGGa -3'
miRNA:   3'- -GUGGAa--------GCAGG---GCCu------GUCUCGCGCCg -5'
9045 3' -58.9 NC_002512.2 + 40075 0.66 0.902874
Target:  5'- cCACCgucUCGUgucCCCGGAucggagagaCAGAGCcucguaCGGCg -3'
miRNA:   3'- -GUGGa--AGCA---GGGCCU---------GUCUCGc-----GCCG- -5'
9045 3' -58.9 NC_002512.2 + 122728 0.66 0.902874
Target:  5'- aCGCCc---UCCCGGGCGGAaacGCGCugagggGGCg -3'
miRNA:   3'- -GUGGaagcAGGGCCUGUCU---CGCG------CCG- -5'
9045 3' -58.9 NC_002512.2 + 30391 0.66 0.902874
Target:  5'- gACCUgauccUCGcggCCCugacGGACGGGGaCGCGGg -3'
miRNA:   3'- gUGGA-----AGCa--GGG----CCUGUCUC-GCGCCg -5'
9045 3' -58.9 NC_002512.2 + 109698 0.66 0.901074
Target:  5'- gCACCcccggCGUCaCC-GACAGgaugcugaucgggaAGCGCGGCc -3'
miRNA:   3'- -GUGGaa---GCAG-GGcCUGUC--------------UCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 132152 0.66 0.8968
Target:  5'- cCACC-UCGaggUCGGu--GAGCGCGGCg -3'
miRNA:   3'- -GUGGaAGCag-GGCCuguCUCGCGCCG- -5'
9045 3' -58.9 NC_002512.2 + 33505 0.66 0.8968
Target:  5'- gACCcgcggCGUCCCGaAguGAGCcCGGCc -3'
miRNA:   3'- gUGGaa---GCAGGGCcUguCUCGcGCCG- -5'
9045 3' -58.9 NC_002512.2 + 208688 0.66 0.8968
Target:  5'- gGCCgcUGUCCCuGGACGGGuaccCGgGGCu -3'
miRNA:   3'- gUGGaaGCAGGG-CCUGUCUc---GCgCCG- -5'
9045 3' -58.9 NC_002512.2 + 128009 0.66 0.8968
Target:  5'- gCGCUUUCG-CCCGcGGCu--GCuGCGGCc -3'
miRNA:   3'- -GUGGAAGCaGGGC-CUGucuCG-CGCCG- -5'
9045 3' -58.9 NC_002512.2 + 134908 0.66 0.8968
Target:  5'- gCACCU--GUaCgCGGACc-GGCGCGGCg -3'
miRNA:   3'- -GUGGAagCA-GgGCCUGucUCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.