miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 32567 0.66 0.988343
Target:  5'- -cGCCGGgcGCCGCGg-GUGCcGGGGu -3'
miRNA:   3'- uaUGGCCuuUGGUGCggUACGuCUCC- -5'
9045 5' -53.6 NC_002512.2 + 149415 0.66 0.988343
Target:  5'- -gGCCgcgaGGGGACCGCGgCGggggcgggcGCGGGGGg -3'
miRNA:   3'- uaUGG----CCUUUGGUGCgGUa--------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 35907 0.66 0.988343
Target:  5'- -gAUUGGAAgcGCCcgguuGCGCCAUGuCGGAGu -3'
miRNA:   3'- uaUGGCCUU--UGG-----UGCGGUAC-GUCUCc -5'
9045 5' -53.6 NC_002512.2 + 56053 0.66 0.988343
Target:  5'- ---aCGGAGGaccuCCugGCCAUGgAGAGc -3'
miRNA:   3'- uaugGCCUUU----GGugCGGUACgUCUCc -5'
9045 5' -53.6 NC_002512.2 + 217581 0.66 0.988343
Target:  5'- -aGCCGGuccGGCgGCGCCGccuCGGGGGu -3'
miRNA:   3'- uaUGGCCu--UUGgUGCGGUac-GUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 140038 0.66 0.988343
Target:  5'- -cACCGcacgcaGAACCGgGCCGUGCAGcgcGGu -3'
miRNA:   3'- uaUGGCc-----UUUGGUgCGGUACGUCu--CC- -5'
9045 5' -53.6 NC_002512.2 + 86204 0.66 0.988343
Target:  5'- cGUGCCcGAcACCcCGCCcgGCuucggGGAGGg -3'
miRNA:   3'- -UAUGGcCUuUGGuGCGGuaCG-----UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 121129 0.66 0.988343
Target:  5'- -aGCCGGAucgcCCGCGCCGcGCAcugccuccgcGAGa -3'
miRNA:   3'- uaUGGCCUuu--GGUGCGGUaCGU----------CUCc -5'
9045 5' -53.6 NC_002512.2 + 58067 0.66 0.988343
Target:  5'- gGUACCGGAuGCCGgGCa--GCAGGa- -3'
miRNA:   3'- -UAUGGCCUuUGGUgCGguaCGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 46741 0.66 0.988343
Target:  5'- -gGCgGGGAAgCGCGC---GCAGGGGa -3'
miRNA:   3'- uaUGgCCUUUgGUGCGguaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 204351 0.66 0.988343
Target:  5'- uGUGCCGcGucGCCuACGCCAUGagcaAGGGc -3'
miRNA:   3'- -UAUGGC-CuuUGG-UGCGGUACg---UCUCc -5'
9045 5' -53.6 NC_002512.2 + 113134 0.66 0.988343
Target:  5'- --cUCGGAGACCGCGC---GCGGGGc -3'
miRNA:   3'- uauGGCCUUUGGUGCGguaCGUCUCc -5'
9045 5' -53.6 NC_002512.2 + 92567 0.66 0.988343
Target:  5'- --gUCGGAGgcGCCgACGCCGcgGCcgGGAGGg -3'
miRNA:   3'- uauGGCCUU--UGG-UGCGGUa-CG--UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 8854 0.66 0.987457
Target:  5'- cUGCCGGGcggcaccccguugguGGCCGCGUgGUGaCAGAa- -3'
miRNA:   3'- uAUGGCCU---------------UUGGUGCGgUAC-GUCUcc -5'
9045 5' -53.6 NC_002512.2 + 43952 0.66 0.986838
Target:  5'- -gGCCGuccuGAAGCCcuucucguCGaCCcgGCAGAGGg -3'
miRNA:   3'- uaUGGC----CUUUGGu-------GC-GGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 93710 0.66 0.986838
Target:  5'- --cCCGGcGACCcCGCCGcGCGGcGGa -3'
miRNA:   3'- uauGGCCuUUGGuGCGGUaCGUCuCC- -5'
9045 5' -53.6 NC_002512.2 + 204646 0.66 0.986838
Target:  5'- -gACCGGGAcgGCgACGC---GCGGGGGa -3'
miRNA:   3'- uaUGGCCUU--UGgUGCGguaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 174334 0.66 0.986679
Target:  5'- -gGCgGGGGuccGCCGCGCCcucguccgccgggAUGCGGAuGGc -3'
miRNA:   3'- uaUGgCCUU---UGGUGCGG-------------UACGUCU-CC- -5'
9045 5' -53.6 NC_002512.2 + 110412 0.66 0.985865
Target:  5'- -cGCCGGA--CCGCGCCuuccacuuccgcccgAUcuagagGCGGAGGa -3'
miRNA:   3'- uaUGGCCUuuGGUGCGG---------------UA------CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 33422 0.66 0.985187
Target:  5'- -aGCCGGAGAUguCGCC--GCAGcccAGGu -3'
miRNA:   3'- uaUGGCCUUUGguGCGGuaCGUC---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.